Rw4G012720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000450
Physical Location & Seq
Reverse (-)
29924798 .. 29927846
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012720.1

Sequence Viewer

Length: 615 bp
ATGAGTGAAATTCAGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACAATCCGTTGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTGAAAGAAACATGGCAGATTGATAAGACTGGAGTTGAACCGAGTCCAATAGAGATGTTTAGAAGGTTTCATATTTCTAAGCCTAAAGATGGAAAACCGGAGCATTGGCAGAGTGAGAAGGCAAAGGATCTTTATGAATGTATGGAATTGCAAAAACGTATAGAGGAGACTTTGGGTGGTGATGGCGAAGACGAATTGGATGATTGGGACATATACAAGGAGGTGGTTGGTGGGTCTAAACATGGCAAAATTCGTGGCTTAGGTGACGGAATGGAACCACCTGAAGATGTGTGCGGTTCGAGTAGCAGCCAAACTTGCAATAAGCGCATGTGTTTGGAACGTGACAAAGAGTTTGGACAATTGGAACAACAAGTTCATACTCTTACGGATATGGTGGCTGATTTGAAACAAGTCCTTCAAGCTTTCATGGCAAATAGTTCGCTACTTGATACATATAGCTCAATACATTCCAACTCCACACATGACTATGACTTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.42

Weight (kDa)

5.04

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 47 - 130 8.3e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 28, 408
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 2 cut(s) 9, 363
AcuI CTGAAG 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 4 cut(s) 79, 152, 520, 533
AluBI AGCT 3 cut(s) 50, 536, 573
AluI AGCT 3 cut(s) 50, 536, 573
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 44, 47, 420
ApoI RAATTY 2 cut(s) 9, 363
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AspLEI GCGC 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 305, 389
BbsI GAAGAC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 31, 59, 432
BccI CCATC 2 cut(s) 197, 290
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BcoDI GTCTC 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 45, 48, 421
BlsI GCNGC 3 cut(s) 46, 49, 422
BmiI GGNNCC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 31, 59, 432
BsiSI CCGG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 335
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 28, 408
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 192, 373, 612
BstF5I GGATG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 4 cut(s) 56, 429, 438, 542
BstNSI RCATGY 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 31, 59, 432
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 241
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 1 cut(s) 319
CfoI GCGC 1 cut(s) 441
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 5 cut(s) 126, 356, 442, 541, 596
CviJI RGCY 9 cut(s) 50, 82, 115, 196, 372, 423, 512, 536, 573
CviKI_1 RGCY 9 cut(s) 50, 82, 115, 196, 372, 423, 512, 536, 573
DdeI CTNAG 3 cut(s) 192, 373, 612
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 417
FaeI CATG 5 cut(s) 129, 359, 445, 544, 599
FaqI GGGAC 1 cut(s) 335
FatI CATG 5 cut(s) 125, 355, 441, 540, 595
Fnu4HI GCNGC 3 cut(s) 45, 48, 421
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 45, 48, 421
GlaI GCGC 1 cut(s) 440
GluI GCNGC 3 cut(s) 45, 48, 421
GsuI CTGGAG 1 cut(s) 165
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 441
Hin1II CATG 5 cut(s) 129, 359, 445, 544, 599
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 305, 389
Hpy188I TCNGA 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 171, 226, 539
HpyCH4IV ACGT 2 cut(s) 271, 454
HpyCH4V TGCA 3 cut(s) 47, 265, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 429, 438, 542
HpyF3I CTNAG 3 cut(s) 192, 373, 612
HpySE526I ACGT 2 cut(s) 271, 454
Hsp92II CATG 5 cut(s) 129, 359, 445, 544, 599
HspAI GCGC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 96, 129, 225, 408
Lsp1109I GCAGC 3 cut(s) 31, 59, 432
MaeII ACGT 2 cut(s) 271, 454
MaeIII GTNAC 2 cut(s) 377, 455
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 314, 410
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 1 cut(s) 241
MluCI AATT 5 cut(s) 9, 260, 308, 363, 473
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 2 cut(s) 271, 328
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 56, 429, 438, 542
NdeII GATC 1 cut(s) 241
NlaIII CATG 5 cut(s) 129, 359, 445, 544, 599
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 377, 455
NspI RCATGY 1 cut(s) 445
PkrI GCNGC 3 cut(s) 46, 49, 422
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 390
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 600
SatI GCNGC 3 cut(s) 45, 48, 421
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 166
SetI ASST 9 cut(s) 52, 182, 274, 339, 379, 397, 457, 538, 575
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 5 cut(s) 9, 260, 308, 363, 473
SsiI CCGC 2 cut(s) 28, 408
TaiI ACGT 2 cut(s) 274, 457
TaqI TCGA 2 cut(s) 52, 413
TasI AATT 5 cut(s) 9, 260, 308, 363, 473
TseFI GTSAC 2 cut(s) 377, 455
TseI GCWGC 3 cut(s) 44, 47, 420
Tsp45I GTSAC 2 cut(s) 377, 455
TspDTI ATGAA 5 cut(s) 123, 173, 264, 479, 529
TspGWI ACGGA 3 cut(s) 57, 396, 515
XapI RAATTY 2 cut(s) 9, 363
XceI RCATGY 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.