Prupe.7G020400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000450
Physical Location & Seq
Reverse (-)
3018615 .. 3019635
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G020400.1

Sequence Viewer

Length: 312 bp
ATGGAGGGGGAGAAAGTTGGCGAAGTGAAAAAGGCTAAAGAAATTTTTTTACATTGCCCCCACTTTGTTTCTCATTATCCTGCTTTTTATTCACATGAAATTTTGTTTATATCCTTGTTTATGTTTTCTATAATTTCATTGACGGAAAAAATGAAGAATAAAAAGGCTACTGCCACAGAAGAAGAGAATGAAGTAAATGGTTGGGATATATACAAGGAAGTTATTGGTGGGCCAAGTCACGGTCGTATCCTTGGCTTAGGTGGTGGCTTTAGTACAAAAGATGTGTATCATTCAGATAGTGTTTGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

6.28

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 42, 99
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 239
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 42, 99
AspS9I GGNCC 1 cut(s) 230
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BciVI GTATCC 1 cut(s) 257
BfuI GTATCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 52
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 239
BsnI GGCC 1 cut(s) 232
BspANI GGCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 256
BstMCI CGRYCG 1 cut(s) 244
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 273
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 35, 167, 232, 255, 267
CviKI_1 RGCY 5 cut(s) 35, 167, 232, 255, 267
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 98
FaiI YATR 6 cut(s) 96, 110, 122, 131, 209, 211
FatI CATG 1 cut(s) 94
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 98
LpnPI CCDG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 3 cut(s) 166, 191, 194
MluCI AATT 3 cut(s) 42, 99, 132
MnlI CCTC 1 cut(s) 300
NlaIII CATG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 230
SetI ASST 2 cut(s) 262, 311
SgeI CNNG 7 cut(s) 92, 107, 127, 226, 246, 251, 263
Sse9I AATT 3 cut(s) 42, 99, 132
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 242
TasI AATT 3 cut(s) 42, 99, 132
TatI WGTACW 1 cut(s) 272
TseFI GTSAC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 111, 126, 167, 204
TspGWI ACGGA 1 cut(s) 158
XapI RAATTY 2 cut(s) 42, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.