Rroxscaffold_1G00031650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Forward (+)
44857979 .. 44868391
10413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031650.1

Sequence Viewer

Length: 585 bp
ATGGCCAAGAAAGCAACAGGTCACAAAACGCAATCGGCGAGATGGAAGATATTACTACATCGATCATTGATAATGAAAGACAATAGAATGATAGGGAAGAGAAGGATTGAAGTGGTGAAGAAGGGATTTGAGTTTCGAAAGAAAGGTCGAAGCAGGACACAAGATACCAGTACACCAATCAATGTTAGTCAAACACAAGAGACTGTCCTTGCAAAGAAACCAAAGAGTCACAAAATACCATTAAGCACAGATAGTATTACACCTTCTAATGATAGTGAAGAGCAAGAAACTGAAGAGACATGGTCTGAGTCTCAACCTTCTAATGCAACAGGTTCAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCCAGCTGATATACATGACGGAAGGATCATAACCCCTCAAGCAACACGTGCAATATTCCCACTCTTCAAGCAAGAGCTGACGAAGCCATTTACAATATGGCCTCAATACAAAAAGCAAGGAAAGAACTTGAAAAAGGTGTATGAACGTTGGCAAGAATGTAACTTCAAATGCACATGCTCGAAGAAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.07

Weight (kDa)

10.14

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 538
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 312
AcvI CACGTG 1 cut(s) 440
AfaI GTAC 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 110, 460, 523, 559
AluBI AGCT 3 cut(s) 368, 398, 469
AluI AGCT 3 cut(s) 368, 398, 469
Alw26I GTCTC 3 cut(s) 194, 290, 315
AlwI GGATC 1 cut(s) 425
AoxI GGCC 2 cut(s) 3, 491
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 127, 386
AsuII TTCGAA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
BbrPI CACGTG 1 cut(s) 440
BccI CCATC 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 194, 290, 315
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 61
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 168
BshFI GGCC 2 cut(s) 5, 493
BshVI ATCGAT 1 cut(s) 61
BslFI GGGAC 1 cut(s) 396
BsmAI GTCTC 3 cut(s) 194, 290, 315
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 2 cut(s) 5, 493
Bsp119I TTCGAA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 62, 417
BspANI GGCC 2 cut(s) 5, 493
BspCNI CTCAG 1 cut(s) 298
BspDI ATCGAT 1 cut(s) 61
BspPI GGATC 1 cut(s) 425
BspQI GCTCTTC 1 cut(s) 273
BspT104I TTCGAA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 168
BssMI GATC 2 cut(s) 62, 417
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 4 cut(s) 92, 273, 288, 461
BstAPI GCANNNNNTGC 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 392, 396
BstDEI CTNAG 3 cut(s) 306, 345, 369
BstKTI GATC 2 cut(s) 65, 420
BstMAI GTCTC 3 cut(s) 194, 290, 315
BstMBI GATC 2 cut(s) 62, 417
BstMWI GCNNNNNNNGC 3 cut(s) 11, 440, 475
BstNSI RCATGY 2 cut(s) 394, 570
Bsu15I ATCGAT 1 cut(s) 61
BsuRI GGCC 2 cut(s) 5, 493
BsuTUI ATCGAT 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 392, 396
Cfr13I GGNCC 1 cut(s) 338
ClaI ATCGAT 1 cut(s) 61
Csp6I GTAC 1 cut(s) 171
CviAII CATG 5 cut(s) 300, 386, 391, 407, 567
CviJI RGCY 6 cut(s) 5, 368, 398, 469, 478, 493
CviKI_1 RGCY 6 cut(s) 5, 368, 398, 469, 478, 493
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 3 cut(s) 306, 345, 369
DpnI GATC 2 cut(s) 64, 419
DpnII GATC 2 cut(s) 62, 417
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 92, 273, 288, 461
EarI CTCTTC 4 cut(s) 92, 273, 288, 461
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 312
Eco72I CACGTG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 338
FaeI CATG 5 cut(s) 303, 389, 394, 410, 570
FaiI YATR 9 cut(s) 301, 387, 392, 404, 408, 422, 490, 534, 568
FaqI GGGAC 1 cut(s) 396
FatI CATG 5 cut(s) 299, 385, 390, 406, 566
HaeIII GGCC 2 cut(s) 5, 493
Hin1II CATG 5 cut(s) 303, 389, 394, 410, 570
HinfI GANTC 2 cut(s) 226, 308
HphI GGTGA 2 cut(s) 127, 386
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 96, 115, 273, 327, 408
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 439, 538
HpyCH4V TGCA 4 cut(s) 212, 326, 443, 564
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 440, 475
HpyF3I CTNAG 3 cut(s) 306, 345, 369
HpySE526I ACGT 2 cut(s) 439, 538
Hsp92II CATG 5 cut(s) 303, 389, 394, 410, 570
Kzo9I GATC 2 cut(s) 62, 417
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 6 cut(s) 3, 139, 181, 315, 321, 408
MaeII ACGT 2 cut(s) 439, 538
MaeIII GTNAC 3 cut(s) 20, 227, 551
MalI GATC 2 cut(s) 64, 419
MboI GATC 2 cut(s) 62, 417
MboII GAAGA 7 cut(s) 58, 109, 130, 290, 305, 361, 448
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 235, 317
MnlI CCTC 4 cut(s) 351, 353, 438, 504
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 11, 440, 475
NdeII GATC 2 cut(s) 62, 417
NlaIII CATG 5 cut(s) 303, 389, 394, 410, 570
NmuCI GTSAC 2 cut(s) 20, 227
NspI RCATGY 2 cut(s) 394, 570
NspV TTCGAA 1 cut(s) 136
PaeI GCATGC 1 cut(s) 394
PciSI GCTCTTC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PflFI GACNNNGTC 1 cut(s) 301
PleI GAGTC 2 cut(s) 234, 316
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 2 cut(s) 234, 316
Ppu21I YACGTR 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 538
Psp5II RGGWCCY 1 cut(s) 338
PspCI CACGTG 1 cut(s) 440
PspPI GGNCC 1 cut(s) 338
PspPPI RGGWCCY 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 1 cut(s) 242
Sau3AI GATC 2 cut(s) 62, 417
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 2 cut(s) 235, 317
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SphI GCATGC 1 cut(s) 394
SspI AATATT 1 cut(s) 447
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 2 cut(s) 442, 541
TaqI TCGA 4 cut(s) 61, 136, 148, 572
TatI WGTACW 1 cut(s) 170
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 2 cut(s) 20, 227
Tsp45I GTSAC 2 cut(s) 20, 227
TspDTI ATGAA 2 cut(s) 89, 549
TspGWI ACGGA 1 cut(s) 426
Tth111I GACNNNGTC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 338
XceI RCATGY 2 cut(s) 394, 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.