Rh1DG133400

NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 8

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
27958693 .. 27976587
17895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG133400.1

Sequence Viewer

Length: 387 bp
ATGGATGAGTGGAAGACGAAAATGTCAGTTGACAAGTCATGGATGCAGTTAAAACGGTCAAATATAGAGTATTATAACAGAGTTGAAAAATATGCATATAAGCATGCTAATCACAGTGATGGAAGAATCTATTGTCTATGCATCAAATGTCGGAGATTGAGCAGGGCGGCGTCCGAAATCATGGGCAGAAACGGCGTCATCCACCGTTCCCGTCGCCTCTGCGCCGACATGAGCTTCCCCGTCGGCAAACCCTCAGTCCCCGACGTACCCCTCCTCGTCAACGACAAGCTCGCACGTCGTTTACCGAACCCTGTATCGATTGCATCGCCGACACTCTGGGAAAGTACGAAGCTTTGTCTGCTTTGTCTTGGCTGTGCGGAGGTCTGA

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

9.5

Isoelectric Point (pI)

72.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
AasI GACNNNNNNGTC 1 cut(s) 22
AciI CCGC 2 cut(s) 167, 377
AcyI GRCGYC 2 cut(s) 170, 195
AfaI GTAC 2 cut(s) 267, 346
AgsI TTSAA 1 cut(s) 86
AjiI CACGTC 1 cut(s) 296
AluBI AGCT 3 cut(s) 234, 289, 352
AluI AGCT 3 cut(s) 234, 289, 352
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 20
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 208
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 296
BmsI GCATC 3 cut(s) 33, 150, 332
BpiI GAAGAC 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 317
BsaHI GRCGYC 2 cut(s) 170, 195
BseCI ATCGAT 1 cut(s) 317
BseGI GGATG 3 cut(s) 10, 48, 198
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 317
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
BspACI CCGC 2 cut(s) 167, 377
BspCNI CTCAG 1 cut(s) 266
BspDI ATCGAT 1 cut(s) 317
BssNI GRCGYC 2 cut(s) 170, 195
Bst4CI ACNGT 3 cut(s) 57, 116, 206
BstACI GRCGYC 2 cut(s) 170, 195
BstC8I GCNNGC 2 cut(s) 105, 291
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 3 cut(s) 10, 48, 198
BstHHI GCGC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 192, 358
BstNSI RCATGY 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 20
Bsu15I ATCGAT 1 cut(s) 317
BsuTUI ATCGAT 1 cut(s) 317
BtgZI GCGATG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 3 cut(s) 10, 48, 198
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 105, 291
CfoI GCGC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 2 cut(s) 159, 184
Csp6I GTAC 2 cut(s) 266, 345
CviAII CATG 4 cut(s) 39, 104, 181, 229
CviJI RGCY 4 cut(s) 234, 289, 352, 372
CviKI_1 RGCY 4 cut(s) 234, 289, 352, 372
CviQI GTAC 2 cut(s) 266, 345
DdeI CTNAG 1 cut(s) 253
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EcoT22I ATGCAT 2 cut(s) 97, 143
FaeI CATG 4 cut(s) 42, 107, 184, 232
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 38, 103, 180, 228
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 3 cut(s) 17, 55, 185
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 168
HgaI GACGC 2 cut(s) 159, 184
HhaI GCGC 1 cut(s) 224
Hin1I GRCGYC 2 cut(s) 170, 195
Hin1II CATG 4 cut(s) 42, 107, 184, 232
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HincII GTYRAC 2 cut(s) 31, 280
HindII GTYRAC 2 cut(s) 31, 280
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 31, 280, 302
Hpy188I TCNGA 3 cut(s) 153, 175, 386
Hpy8I GTNNAC 3 cut(s) 31, 280, 302
Hpy99I CGWCG 4 cut(s) 216, 245, 266, 300
HpyCH4III ACNGT 3 cut(s) 57, 116, 206
HpyCH4IV ACGT 2 cut(s) 264, 295
HpyCH4V TGCA 4 cut(s) 46, 95, 141, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 358
HpyF3I CTNAG 1 cut(s) 253
HpySE526I ACGT 2 cut(s) 264, 295
Hsp92I GRCGYC 2 cut(s) 170, 195
Hsp92II CATG 4 cut(s) 42, 107, 184, 232
HspAI GCGC 1 cut(s) 222
LpnPI CCDG 3 cut(s) 148, 322, 324
LweI GCATC 3 cut(s) 33, 150, 332
MaeII ACGT 2 cut(s) 264, 295
MboII GAAGA 2 cut(s) 25, 135
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 5 cut(s) 227, 262, 281, 284, 373
Mph1103I ATGCAT 2 cut(s) 97, 143
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 192, 358
NlaIII CATG 4 cut(s) 42, 107, 184, 232
NsiI ATGCAT 2 cut(s) 97, 143
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PfeI GAWTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 75
RsaI GTAC 2 cut(s) 267, 346
RsaNI GTAC 2 cut(s) 266, 345
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 168
SetI ASST 6 cut(s) 236, 267, 291, 298, 354, 384
SfaNI GCATC 3 cut(s) 33, 150, 332
SmiMI CAYNNNNRTG 1 cut(s) 117
SphI GCATGC 1 cut(s) 107
SsiI CCGC 2 cut(s) 167, 377
TaaI ACNGT 3 cut(s) 57, 116, 206
TaiI ACGT 2 cut(s) 267, 298
TaqI TCGA 1 cut(s) 317
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 121
TspRI CASTG 1 cut(s) 121
XceI RCATGY 1 cut(s) 107
Zsp2I ATGCAT 2 cut(s) 97, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.