Prupe.2G062800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000450
Physical Location & Seq
Forward (+)
8317247 .. 8321809
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G062800.1

Sequence Viewer

Length: 381 bp
ATGCCTCTGTTGAACCATCTCATGATAATGAAGTACAAGAAATTCAAGAGACATGCTCTGAGGCTCAACCTTCAAATACCCAAGGATGAAGTGCTGGAAAAAAAAAAAAAAGGCAGATGGAAGGCCAAGGGAGGAAAAGGAAAGGGTATGCTGATTGAAATATATAAGGGATGCATTGTGACCAAAGAAGCTGCTCGGAATATAGGTGTACTTTTCAAGCAAGAGATTAAAGGAGCTTGGGTAAAATTTTCAGATTATCTGGAGACTCAAGTAAATCTATTAATTGAGCTTTTCATCGAAGCTGGATATACTTACACATGTTCTGAGGAAGAATTGAAGGTTGCATTCACTGGACATATTAAAAAAAAAATTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.57

Weight (kDa)

9.72

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 41, 245
AfaI GTAC 2 cut(s) 35, 210
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 6 cut(s) 13, 46, 74, 158, 217, 337
AluBI AGCT 4 cut(s) 191, 236, 289, 302
AluI AGCT 4 cut(s) 191, 236, 289, 302
Alw26I GTCTC 2 cut(s) 43, 257
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 41, 245
AseI ATTAAT 1 cut(s) 281
BbvI GCAGC 1 cut(s) 178
BccI CCATC 2 cut(s) 24, 111
BcoDI GTCTC 2 cut(s) 43, 257
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmsI GCATC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 81, 126
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 81, 126
BseGI GGATG 2 cut(s) 91, 176
BseMII CTCAG 2 cut(s) 50, 315
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 43, 257
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 1 cut(s) 125
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 51, 316
BspHI TCATGA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 81, 126
BssT1I CCWWGG 2 cut(s) 81, 126
BstDEI CTNAG 2 cut(s) 59, 324
BstF5I GGATG 2 cut(s) 91, 176
BstMAI GTCTC 2 cut(s) 43, 257
BstNSI RCATGY 2 cut(s) 56, 321
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 2 cut(s) 91, 176
BtsIMutI CAGTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 21
Csp6I GTAC 2 cut(s) 34, 209
CviAII CATG 3 cut(s) 22, 53, 318
CviJI RGCY 6 cut(s) 64, 125, 191, 236, 289, 302
CviKI_1 RGCY 6 cut(s) 64, 125, 191, 236, 289, 302
CviQI GTAC 2 cut(s) 34, 209
DdeI CTNAG 2 cut(s) 59, 324
Eco130I CCWWGG 2 cut(s) 81, 126
EcoT14I CCWWGG 2 cut(s) 81, 126
EcoT22I ATGCAT 1 cut(s) 176
ErhI CCWWGG 2 cut(s) 81, 126
FaeI CATG 3 cut(s) 25, 56, 321
FaiI YATR 9 cut(s) 23, 54, 149, 163, 165, 203, 309, 319, 357
FatI CATG 3 cut(s) 21, 52, 317
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 2 cut(s) 98, 183
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 3 cut(s) 25, 56, 321
HinfI GANTC 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 4 cut(s) 60, 198, 253, 325
Hpy188III TCNNGA 3 cut(s) 22, 46, 260
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 80, 115, 331
HpyCH4V TGCA 2 cut(s) 174, 344
HpyF3I CTNAG 2 cut(s) 59, 324
Hsp92II CATG 3 cut(s) 25, 56, 321
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 80, 245, 288, 336
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 1 cut(s) 341
MluCI AATT 5 cut(s) 41, 245, 282, 332, 369
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 4 cut(s) 15, 54, 125, 319
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 3 cut(s) 228, 281, 360
MslI CAYNNNNRTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 344
NlaIII CATG 3 cut(s) 25, 56, 321
NmuCI GTSAC 1 cut(s) 178
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 2 cut(s) 56, 321
PagI TCATGA 1 cut(s) 21
PciI ACATGT 1 cut(s) 317
PctI GAATGC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PscI ACATGT 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 281
RsaI GTAC 2 cut(s) 35, 210
RsaNI GTAC 2 cut(s) 34, 209
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 228, 281, 360
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 259
SetI ASST 7 cut(s) 72, 193, 208, 238, 291, 304, 342
SfaNI GCATC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 5 cut(s) 41, 245, 282, 332, 369
StyI CCWWGG 2 cut(s) 81, 126
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 41, 245, 282, 332, 369
TatI WGTACW 2 cut(s) 33, 208
Tru1I TTAA 3 cut(s) 228, 281, 360
Tru9I TTAA 3 cut(s) 228, 281, 360
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 44, 102, 283
TspRI CASTG 1 cut(s) 355
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 2 cut(s) 41, 245
XceI RCATGY 2 cut(s) 56, 321
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.