Rroxscaffold_2G00144000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000450
Physical Location & Seq
Reverse (-)
81906615 .. 81923826
17212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144000.1

Sequence Viewer

Length: 441 bp
ATGGGGATTGCTAATTACTTGATTCCCTCTCCGTCAATCACTTTGACGAAGGCACATAATGTAGTGAAGTGGAGTGGATCGGAATCGTTGTTGATTCATTCTTTCGGTGCGGTGCGGCAAGCAAAAGCAAAATTTGAAGATTATGAAAGAGTGAAAGGCCAAGTTGAATCTCTGACAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTGCCTAATAACTCAGACAATTCTAAAGCAAGAAACTCACATTCTGTGACTATTTCCGATGATATTTTTTCCGAGGACCACCGAGGGCACGTAGCTGTCGGAAATACCTTTTTCCGACGGGGAAAATCCATTGGACCTCTGACCAAGTCCATCCTCATGCATGAGGATTCTCTCCCCGTGGGGAGCAAACGCATACATTTGCAACGTCAATTCACAGATACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.24

Weight (kDa)

9.47

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 115
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 131
AgsI TTSAA 3 cut(s) 137, 167, 209
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
AlwI GGATC 1 cut(s) 85
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 2 cut(s) 292, 350
AvaII GGWCC 2 cut(s) 292, 350
BaeGI GKGCMC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 374
BisI GCNGC 2 cut(s) 116, 218
BlsI GCNGC 2 cut(s) 117, 219
Bme18I GGWCC 2 cut(s) 292, 350
BmgT120I GGNCC 2 cut(s) 292, 350
BsaAI YACGTR 2 cut(s) 307, 438
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 288, 298, 393
Bse8I GATNNNNATC 1 cut(s) 82
BseDI CCNNGG 3 cut(s) 288, 298, 393
BseGI GGATG 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 82
BseMII CTCAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 204
BshFI GGCC 1 cut(s) 159
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 2 cut(s) 110, 115
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 242
BspPI GGATC 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 288, 298, 393
BssMI GATC 1 cut(s) 77
BstBAI YACGTR 2 cut(s) 307, 438
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 306
BstSNI TACGTA 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 204
BsuRI GGCC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 292, 350
CviAII CATG 2 cut(s) 373, 377
CviJI RGCY 2 cut(s) 159, 311
CviKI_1 RGCY 2 cut(s) 159, 311
DdeI CTNAG 1 cut(s) 229
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 438
Eco47I GGWCC 2 cut(s) 292, 350
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 2 cut(s) 376, 380
FaiI YATR 5 cut(s) 57, 144, 374, 378, 410
FatI CATG 2 cut(s) 372, 376
Fnu4HI GCNGC 2 cut(s) 116, 218
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 2 cut(s) 116, 218
GluI GCNGC 2 cut(s) 116, 218
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 2 cut(s) 376, 380
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 6 cut(s) 22, 83, 94, 167, 196, 383
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 8 cut(s) 82, 174, 232, 274, 289, 317, 332, 357
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 43
HpyCH4IV ACGT 3 cut(s) 306, 421, 437
HpyCH4V TGCA 2 cut(s) 376, 418
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 3 cut(s) 306, 421, 437
Hsp92II CATG 2 cut(s) 376, 380
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 3 cut(s) 306, 421, 437
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 6 cut(s) 13, 131, 182, 201, 235, 425
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 295, 355
MnlI CCTC 6 cut(s) 37, 283, 293, 363, 373, 380
Mph1103I ATGCAT 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 371
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 376, 380
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 378
PfeI GAWTC 5 cut(s) 22, 83, 94, 167, 383
PflFI GACNNNGTC 1 cut(s) 361
PkrI GCNGC 2 cut(s) 117, 219
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Ppu21I YACGTR 2 cut(s) 307, 438
PspPI GGNCC 2 cut(s) 292, 350
PsyI GACNNNGTC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 2 cut(s) 116, 218
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 2 cut(s) 292, 350
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 306
SetI ASST 6 cut(s) 309, 313, 326, 355, 424, 440
SinI GGWCC 2 cut(s) 292, 350
SmiMI CAYNNNNRTG 1 cut(s) 371
SnaBI TACGTA 1 cut(s) 438
Sse9I AATT 6 cut(s) 13, 131, 182, 201, 235, 425
SsiI CCGC 2 cut(s) 110, 115
TaiI ACGT 3 cut(s) 309, 424, 440
TasI AATT 6 cut(s) 13, 131, 182, 201, 235, 425
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 5 cut(s) 22, 83, 94, 167, 383
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 86, 159
TspGWI ACGGA 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 292, 350
XapI RAATTY 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.