Rroxscaffold_3G00245070

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000450
Physical Location & Seq
Forward (+)
37910807 .. 37912367
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245070.1

Sequence Viewer

Length: 726 bp
ATGAATCAACACATGGTGACAAAGAGAAGGAAGGGCAGGAAACTGAGGCTACCAAGAGGCAAGGTAGAGGCCCTGCCAAAGGAGAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGCTTTGCGAAGTATTTGGCCCCTCTTCGGTCGAGCTGCAAGGGCCATACATAACATGGGCACAATTTCCGCATGAGGAATTGGATAGGTTGTTTGATCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACACATCAACACTCGTTATAGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACAATCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTAAAGGAAATGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGATAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGATTGATAAGACTGGAGTTGAACCGAGTCCAATAGAGATGTTTAGAAGGTTTCATATTTCTAAGCCTAAAGATGGAAAACCGAAACATTGGCAGAGTGAGAAGGCAAAGGATCTTTATGAATCTATGGAATTGCAAAAACGTTTAGAGGAGACTTTGGGTGGTGATGGCGAAGATGAATTGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

241

Amino Acids

28.79

Weight (kDa)

7.72

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 132 - 222 1.5e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 457
AciI CCGC 3 cut(s) 191, 340, 457
AclI AACGTT 1 cut(s) 676
AclWI GGATC 1 cut(s) 654
AcsI RAATTY 3 cut(s) 235, 242, 321
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 3 cut(s) 79, 148, 608
AgsI TTSAA 3 cut(s) 241, 391, 557
AluBI AGCT 3 cut(s) 124, 157, 362
AluI AGCT 3 cut(s) 124, 157, 362
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 1 cut(s) 654
AoxI GGCC 3 cut(s) 69, 139, 164
ApeKI GCWGC 3 cut(s) 157, 356, 359
ApoI RAATTY 3 cut(s) 235, 242, 321
AseI ATTAAT 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 70, 140, 164
AsuHPI GGTGA 2 cut(s) 28, 710
BaeGI GKGCMC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 144, 343, 371
BccI CCATC 2 cut(s) 602, 695
BceAI ACGGC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 680
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 3 cut(s) 158, 357, 360
BlsI GCNGC 3 cut(s) 159, 358, 361
BmgT120I GGNCC 3 cut(s) 70, 140, 164
BmiI GGNNCC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 148, 608
Bse1I ACTGG 2 cut(s) 314, 553
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 318, 724
BseLI CCNNNNNNNGG 3 cut(s) 79, 148, 608
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 314, 553
BseRI GAGGAG 2 cut(s) 548, 698
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 3 cut(s) 144, 343, 371
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 71, 141, 166
BsiEI CGRYCG 1 cut(s) 153
BslI CCNNNNNNNGG 3 cut(s) 79, 148, 608
BsmAI GTCTC 1 cut(s) 680
BsmI GAATGC 2 cut(s) 107, 466
BsnI GGCC 3 cut(s) 71, 141, 166
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 217, 646
BspACI CCGC 3 cut(s) 191, 340, 457
BspANI GGCC 3 cut(s) 71, 141, 166
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 457
BsrI ACTGG 2 cut(s) 314, 553
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 2 cut(s) 217, 646
Bst6I CTCTTC 2 cut(s) 151, 443
BstDEI CTNAG 2 cut(s) 44, 597
BstENI CCTNNNNNAGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 318, 724
BstKTI GATC 2 cut(s) 220, 649
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 2 cut(s) 217, 646
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 163, 368
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 144, 343, 371
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 3 cut(s) 71, 141, 166
BtsCI GGATG 2 cut(s) 318, 724
Cfr13I GGNCC 3 cut(s) 70, 140, 164
Csp6I GTAC 1 cut(s) 523
CviAII CATG 4 cut(s) 13, 98, 177, 194
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 2 cut(s) 44, 597
DpnI GATC 2 cut(s) 219, 648
DpnII GATC 2 cut(s) 217, 646
DraIII CACNNNGTG 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 151, 443
EarI CTCTTC 2 cut(s) 151, 443
EcoNI CCTNNNNNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 70
FaeI CATG 4 cut(s) 16, 101, 180, 197
FatI CATG 4 cut(s) 12, 97, 176, 193
Fnu4HI GCNGC 3 cut(s) 158, 357, 360
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 3 cut(s) 158, 357, 360
GluI GCNGC 3 cut(s) 158, 357, 360
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 3 cut(s) 71, 141, 166
Hin1II CATG 4 cut(s) 16, 101, 180, 197
HinfI GANTC 3 cut(s) 4, 562, 656
HphI GGTGA 2 cut(s) 28, 710
Hpy188I TCNGA 2 cut(s) 256, 327
Hpy188III TCNNGA 1 cut(s) 473
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 4 cut(s) 21, 25, 576, 631
HpyCH4IV ACGT 1 cut(s) 676
HpyCH4V TGCA 6 cut(s) 105, 160, 359, 464, 493, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 368
HpyF3I CTNAG 2 cut(s) 44, 597
HpySE526I ACGT 1 cut(s) 676
Hsp92II CATG 4 cut(s) 16, 101, 180, 197
Kzo9I GATC 2 cut(s) 217, 646
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 6 cut(s) 22, 86, 295, 408, 428, 534
Lsp1109I GCAGC 3 cut(s) 144, 343, 371
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 2 cut(s) 16, 305
MalI GATC 2 cut(s) 219, 648
MbiI CCGCTC 1 cut(s) 457
MboI GATC 2 cut(s) 217, 646
MboII GAAGA 5 cut(s) 138, 238, 272, 460, 719
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 8 cut(s) 185, 200, 235, 242, 321, 465, 665, 713
MlyI GAGTC 1 cut(s) 571
MnlI CCTC 8 cut(s) 39, 50, 61, 154, 190, 250, 526, 676
MseI TTAA 1 cut(s) 468
Mva1269I GAATGC 2 cut(s) 107, 466
MwoI GCNNNNNNNGC 2 cut(s) 163, 368
NdeII GATC 2 cut(s) 217, 646
NlaIII CATG 4 cut(s) 16, 101, 180, 197
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 16, 305
PctI GAATGC 2 cut(s) 107, 466
PfeI GAWTC 2 cut(s) 4, 656
PkrI GCNGC 3 cut(s) 159, 358, 361
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PshBI ATTAAT 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 676
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 3 cut(s) 70, 140, 164
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 3 cut(s) 158, 357, 360
Sau3AI GATC 2 cut(s) 217, 646
Sau96I GGNCC 3 cut(s) 70, 140, 164
SchI GAGTC 1 cut(s) 571
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 66, 126, 159, 212, 364, 587, 679
SfcI CTRYAG 1 cut(s) 357
Sse9I AATT 8 cut(s) 185, 200, 235, 242, 321, 465, 665, 713
SsiI CCGC 3 cut(s) 191, 340, 457
TaiI ACGT 1 cut(s) 679
TaqI TCGA 2 cut(s) 153, 364
TaqII GACCGA 1 cut(s) 139
TasI AATT 8 cut(s) 185, 200, 235, 242, 321, 465, 665, 713
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 4, 656
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 2 cut(s) 16, 305
TseI GCWGC 3 cut(s) 157, 356, 359
Tsp45I GTSAC 2 cut(s) 16, 305
TspDTI ATGAA 6 cut(s) 17, 114, 435, 578, 669, 726
TspGWI ACGGA 2 cut(s) 296, 369
VspI ATTAAT 1 cut(s) 468
XagI CCTNNNNNAGG 1 cut(s) 77
XapI RAATTY 3 cut(s) 235, 242, 321
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.