Rw4G012110

bromo domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000450
Physical Location & Seq
Forward (+)
28470537 .. 28477643
7107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012110.1

Sequence Viewer

Length: 861 bp
ATGGAGGTCAAGAGATATCTAGTCATTGCAAAGAAATCAAAGAGTCGCAAAAGGTCACTAAGCACAGATAGTATTACACTTTCTAATGACAGTGAAGAGCAAGAAACTGAAGAGACAGGGTCTGAGTCTCAACCTTCAAATGCAACAGGTTCAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCCAGCTAATATACATGACGGAAGGATCATAACCCCTCAAGCAACACGTGTAATATTCCCACTCTTCAAGCAAGAGCTGACGGGAGCCATTTACAACATGGCCTCAATACAAAAAGCAAGGAAAGAACTTGAAAAGGAAGATGTAAAGAATGCATTTGAAAAGCATATTGAAAATCGATATCCTGACTGGATGAGCGCAATAAGGAATAGCATTTTCATAAAGCATAAAACCGCTACTGCTCGTTATGCTAATTGCCCAAAAGGAATAAAGAGAAATGTGTGGGCCCAATTGGTTGAAGAATGGTTGAAACCTGAATGGCAGGAGATGAGTGAACGAAACAAAACTAATCGGGATAAATCAACCATTGTTCACACAACGGGCTCAGTTCCAATGGCAAAATGGCGCAAAGAGGAGCTTGATCGAAATGGAGTTGAACCTAGCCCAATAGAGTGTTGGAGGAAGTTCCATGTAAGTAAAGCAAAGGAAGGAAAAGAAGAACATTGGAAAAGTGACAAGGCTAAGGAAATTTATATAAGGAAGATCATCCACATGTTTCTGTACTTCAAGGCCAAGTTTAAGGCTGTCATGTTGATGGGTTGTGACCTGAACGCCACCACCGCCGCCGCCGCCACCACCACTACTTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Transposase_24

Protein Analysis

286

Amino Acids

32.63

Weight (kDa)

9.67

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 162 - 246 7.2e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 441, 828, 831, 834, 837
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 1 cut(s) 735
AcuI CTGAAG 1 cut(s) 129
AcvI CACGTG 1 cut(s) 257
AfaI GTAC 1 cut(s) 770
AflIII ACRYGT 3 cut(s) 254, 256, 759
AgsI TTSAA 9 cut(s) 138, 277, 341, 368, 380, 506, 517, 644, 775
AluBI AGCT 4 cut(s) 185, 215, 286, 625
AluI AGCT 4 cut(s) 185, 215, 286, 625
Alw26I GTCTC 2 cut(s) 107, 132
AlwI GGATC 1 cut(s) 242
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 3 cut(s) 309, 492, 777
ApaI GGGCCC 1 cut(s) 496
ApoI RAATTY 1 cut(s) 735
AspLEI GCGC 2 cut(s) 407, 615
AspS9I GGNCC 3 cut(s) 155, 492, 493
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 496
BanII GRGCYC 2 cut(s) 496, 593
BbrPI CACGTG 1 cut(s) 257
BccI CCATC 1 cut(s) 796
BcoDI GTCTC 2 cut(s) 107, 132
BfaI CTAG 2 cut(s) 20, 648
BisI GCNGC 3 cut(s) 831, 834, 837
BlsI GCNGC 3 cut(s) 832, 835, 838
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 155, 492, 493
BmiI GGNNCC 2 cut(s) 295, 494
Bpu10I CCTNAGC 2 cut(s) 186, 729
BpuEI CTTGAG 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 385
BsaAI YACGTR 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 385
BseGI GGATG 2 cut(s) 405, 753
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 114, 606
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 496
BshFI GGCC 3 cut(s) 311, 494, 779
BshVI ATCGAT 1 cut(s) 385
BslFI GGGAC 1 cut(s) 213
BsmAI GTCTC 2 cut(s) 107, 132
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 3 cut(s) 311, 494, 779
Bsp120I GGGCCC 1 cut(s) 492
Bsp1286I GDGCHC 2 cut(s) 496, 593
Bsp143I GATC 3 cut(s) 234, 628, 750
BspACI CCGC 5 cut(s) 441, 828, 831, 834, 837
BspANI GGCC 3 cut(s) 311, 494, 779
BspCNI CTCAG 2 cut(s) 115, 605
BspDI ATCGAT 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 295, 494
BspPI GGATC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 401
BssMI GATC 3 cut(s) 234, 628, 750
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 3 cut(s) 90, 105, 278
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 209, 213
BstDEI CTNAG 6 cut(s) 59, 123, 162, 186, 592, 729
BstF5I GGATG 2 cut(s) 405, 753
BstHHI GCGC 2 cut(s) 407, 615
BstKTI GATC 3 cut(s) 237, 631, 753
BstMAI GTCTC 2 cut(s) 107, 132
BstMBI GATC 3 cut(s) 234, 628, 750
BstMWI GCNNNNNNNGC 3 cut(s) 455, 827, 836
BstNSI RCATGY 2 cut(s) 211, 763
BstSLI GKGCMC 1 cut(s) 496
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 3 cut(s) 311, 494, 779
BsuTUI ATCGAT 1 cut(s) 385
BtsCI GGATG 2 cut(s) 405, 753
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 209, 213
CaiI CAGNNNCTG 1 cut(s) 122
CfoI GCGC 2 cut(s) 407, 615
Cfr13I GGNCC 3 cut(s) 155, 492, 493
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 1 cut(s) 769
CviAII CATG 7 cut(s) 203, 208, 224, 307, 677, 760, 796
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 6 cut(s) 59, 123, 162, 186, 592, 729
DpnI GATC 3 cut(s) 236, 630, 752
DpnII GATC 3 cut(s) 234, 628, 750
Eam1104I CTCTTC 3 cut(s) 90, 105, 278
EarI CTCTTC 3 cut(s) 90, 105, 278
Eco24I GRGCYC 2 cut(s) 496, 593
Eco32I GATATC 2 cut(s) 17, 389
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 129
Eco72I CACGTG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 155
EcoRV GATATC 2 cut(s) 17, 389
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 2 cut(s) 496, 593
FaeI CATG 7 cut(s) 206, 211, 227, 310, 680, 763, 799
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 213
FatI CATG 7 cut(s) 202, 207, 223, 306, 676, 759, 795
Fnu4HI GCNGC 3 cut(s) 831, 834, 837
FokI GGATG 2 cut(s) 412, 740
FriOI GRGCYC 2 cut(s) 496, 593
Fsp4HI GCNGC 3 cut(s) 831, 834, 837
FspBI CTAG 2 cut(s) 20, 648
GlaI GCGC 2 cut(s) 406, 614
GluI GCNGC 3 cut(s) 831, 834, 837
HaeIII GGCC 3 cut(s) 311, 494, 779
HhaI GCGC 2 cut(s) 407, 615
Hin1II CATG 7 cut(s) 206, 211, 227, 310, 680, 763, 799
Hin6I GCGC 2 cut(s) 405, 613
HinP1I GCGC 2 cut(s) 405, 613
HinfI GANTC 2 cut(s) 43, 125
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 542, 580
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 10, 392, 560
Hpy8I GTNNAC 2 cut(s) 542, 580
HpyAV CCTTC 3 cut(s) 144, 225, 689
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 29, 143, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 827, 836
HpyF3I CTNAG 6 cut(s) 59, 123, 162, 186, 592, 729
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 7 cut(s) 206, 211, 227, 310, 680, 763, 799
HspAI GCGC 2 cut(s) 405, 613
Kzo9I GATC 3 cut(s) 234, 628, 750
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 182, 293, 622
LpnPI CCDG 9 cut(s) 102, 132, 138, 225, 382, 405, 515, 534, 827
MaeI CTAG 2 cut(s) 20, 648
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 3 cut(s) 54, 719, 809
MalI GATC 3 cut(s) 236, 630, 752
MboI GATC 3 cut(s) 234, 628, 750
MboII GAAGA 8 cut(s) 107, 122, 178, 265, 359, 518, 716, 760
MfeI CAATTG 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 496, 593
MluCI AATT 3 cut(s) 460, 497, 735
MlyI GAGTC 2 cut(s) 52, 134
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 6 cut(s) 168, 170, 255, 322, 613, 660
Mph1103I ATGCAT 1 cut(s) 364
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 2 cut(s) 758, 800
MunI CAATTG 1 cut(s) 497
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 455, 827, 836
NdeII GATC 3 cut(s) 234, 628, 750
NlaIII CATG 7 cut(s) 206, 211, 227, 310, 680, 763, 799
NlaIV GGNNCC 2 cut(s) 295, 494
NmuCI GTSAC 3 cut(s) 54, 719, 809
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 2 cut(s) 211, 763
PaeI GCATGC 1 cut(s) 211
PciI ACATGT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 90
PctI GAATGC 1 cut(s) 364
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 832, 835, 838
PleI GAGTC 2 cut(s) 51, 133
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 2 cut(s) 51, 133
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 155
PscI ACATGT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 155
PspCI CACGTG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 295, 494
PspOMI GGGCCC 1 cut(s) 492
PspPI GGNCC 3 cut(s) 155, 492, 493
PspPPI RGGWCCY 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 2 cut(s) 758, 800
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 3 cut(s) 831, 834, 837
Sau3AI GATC 3 cut(s) 234, 628, 750
Sau96I GGNCC 3 cut(s) 155, 492, 493
SchI GAGTC 2 cut(s) 52, 134
SduI GDGCHC 2 cut(s) 496, 593
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 758, 800
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
SphI GCATGC 1 cut(s) 211
Sse9I AATT 3 cut(s) 460, 497, 735
SsiI CCGC 5 cut(s) 441, 828, 831, 834, 837
SspI AATATT 1 cut(s) 264
SspMI CTAG 2 cut(s) 20, 648
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 385, 631
TasI AATT 3 cut(s) 460, 497, 735
TatI WGTACW 1 cut(s) 768
TauI GCSGC 3 cut(s) 833, 836, 839
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 3 cut(s) 54, 719, 809
Tsp45I GTSAC 3 cut(s) 54, 719, 809
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 1 cut(s) 735
XceI RCATGY 2 cut(s) 211, 763
XcmI CCANNNNNNNNNTGG 3 cut(s) 304, 606, 660
XspI CTAG 2 cut(s) 20, 648
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.