Rroxscaffold_1G00029010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Reverse (-)
37461651 .. 37464495
2845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029010.1

Sequence Viewer

Length: 249 bp
ATGGAACCACTTGAAGATGTGTGCGGTTCGAGTAGCAGCCAAACTTGCAATAAGCGTGTGTGTTTGGAACGTGACAAAGAGTTTGGACAATTGAAACAACAAGTTCATACTCTTACGGATATGGTGGCTGATTTGAAACAAGTCCTTCAAGCTTTCATGGCAAATAGTTCAAGTCATTCTCAATTTGCGAGAGAATCACCATTTTCGGGTAAATCTACTAATGGAGATTCCGAAGCAAATGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

5.19

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 5 cut(s) 14, 94, 136, 149, 171
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsuHPI GGTGA 1 cut(s) 189
BbvI GCAGC 1 cut(s) 48
BcgI CGANNNNNNTGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 206
BspACI CCGC 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 45, 158
BstV1I GCAGC 1 cut(s) 48
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 39, 128, 152
CviKI_1 RGCY 3 cut(s) 39, 128, 152
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 108, 122, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 194, 227
HphI GGTGA 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 48, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 158
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 48
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 1 cut(s) 89
MluCI AATT 2 cut(s) 89, 182
Mph1103I ATGCAT 1 cut(s) 244
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 45, 158
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 244
PfeI GAWTC 2 cut(s) 194, 227
PkrI GCNGC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 1 cut(s) 37
SetI ASST 2 cut(s) 73, 154
Sse9I AATT 2 cut(s) 89, 182
SsiI CCGC 1 cut(s) 24
TaiI ACGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 89, 182
TfiI GAWTC 2 cut(s) 194, 227
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 95, 145
TspGWI ACGGA 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.