FvH4_1g20080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000450
Physical Location & Seq
Forward (+)
12260440 .. 12261775
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20080.t1

Sequence Viewer

Length: 519 bp
ATGAGAGGGGAGAAAATTAATAGGACCGGAGTTGAACCAAGCCTAGTAGAGATGTTTAGAAGGTTTCATGTCTCTGCTCCTAAAGACGGAAAGCTGAAACATTGGAAGAGTGAGAAGGCAAAAGATCTTTATGAATCTATGAAACTGAAAGAGAAAATAGATGAAGCTTTGGGTGGTGACGAATTGGATGAATGGGACATATATAAGGAAGAGGTCCTCAAAGAGCCCAAACGTGGCAAAACACTTGGCTTAGGTGGTAGAATGGAACCACCTGAAGCTGTGTGTGGTTCGATTAGCAGCCAAACTTGCAATAAACATTCGTGCTTAGAACGTGAAGAGGAGTTTGGACAAGTGAAACATAAAGTTGAAAATCTTACGGATGAGGTGGCAGATTTGAAACAACTCATTCAAGTTTTGCTTGCAAGAGAATCAGCCTCTTCGCTTGGTTCCTCAAACTCATCTACAACTGCACCAATCTTAAAATCTGCTCATGGAGATTATGAAGCACGTGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

6.01

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 294
AcvI CACGTG 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 86, 233
AgsI TTSAA 4 cut(s) 35, 368, 397, 410
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 3 cut(s) 94, 167, 278
AluI AGCT 3 cut(s) 94, 167, 278
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 510
ApaLI GTGCAC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 297
AseI ATTAAT 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 24, 214
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 24, 214
BaeGI GKGCMC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 228
BbrPI CACGTG 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 44
BglII AGATCT 1 cut(s) 124
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
Bme18I GGWCC 2 cut(s) 24, 214
BmgT120I GGNCC 2 cut(s) 24, 214
BmiI GGNNCC 2 cut(s) 267, 448
Bpu10I CCTNAGC 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 233
BseGI GGATG 2 cut(s) 193, 385
BseLI CCNNNNNNNGG 2 cut(s) 86, 233
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 86, 233
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 228, 514
Bsp143I GATC 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 267, 448
BssMI GATC 1 cut(s) 124
Bst6I CTCTTC 4 cut(s) 101, 204, 330, 442
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 250, 325
BstF5I GGATG 2 cut(s) 193, 385
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtsCI GGATG 2 cut(s) 193, 385
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 24, 214
CviAII CATG 2 cut(s) 68, 491
CviJI RGCY 8 cut(s) 42, 94, 167, 226, 249, 278, 300, 434
CviKI_1 RGCY 8 cut(s) 42, 94, 167, 226, 249, 278, 300, 434
DdeI CTNAG 2 cut(s) 250, 325
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 4 cut(s) 101, 204, 330, 442
EarI CTCTTC 4 cut(s) 101, 204, 330, 442
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 24, 214
Eco57I CTGAAG 1 cut(s) 294
Eco72I CACGTG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 2 cut(s) 71, 494
FaiI YATR 9 cut(s) 69, 132, 140, 200, 202, 204, 360, 492, 501
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 67, 490
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 2 cut(s) 200, 392
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 298
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 71, 494
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 134, 428
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 512
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 2 cut(s) 54, 109
HpyCH4IV ACGT 3 cut(s) 232, 331, 508
HpyCH4V TGCA 4 cut(s) 309, 422, 470, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 250, 325
HpySE526I ACGT 3 cut(s) 232, 331, 508
Hsp92II CATG 2 cut(s) 71, 494
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 40, 285
Lsp1109I GCAGC 1 cut(s) 309
MaeI CTAG 1 cut(s) 44
MaeII ACGT 3 cut(s) 232, 331, 508
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 4 cut(s) 118, 221, 347, 429
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 228, 514
MluCI AATT 2 cut(s) 15, 182
MnlI CCTC 6 cut(s) 205, 227, 331, 376, 445, 460
MseI TTAA 2 cut(s) 18, 479
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 1 cut(s) 124
NlaIII CATG 2 cut(s) 71, 494
NlaIV GGNNCC 2 cut(s) 267, 448
NmuCI GTSAC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 134, 428
PkrI GCNGC 1 cut(s) 299
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
Ppu21I YACGTR 1 cut(s) 509
PpuMI RGGWCCY 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 214
PspCI CACGTG 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 267, 448
PspPI GGNCC 2 cut(s) 24, 214
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 124
SaqAI TTAA 2 cut(s) 18, 479
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 24, 214
SduI GDGCHC 2 cut(s) 228, 514
SinI GGWCC 2 cut(s) 24, 214
Sse9I AATT 2 cut(s) 15, 182
SspMI CTAG 1 cut(s) 44
TaiI ACGT 3 cut(s) 235, 334, 511
TaqI TCGA 1 cut(s) 290
TasI AATT 2 cut(s) 15, 182
TfiI GAWTC 2 cut(s) 134, 428
Tru1I TTAA 2 cut(s) 18, 479
Tru9I TTAA 2 cut(s) 18, 479
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 1 cut(s) 297
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 6 cut(s) 56, 147, 155, 177, 204, 516
TspGWI ACGGA 2 cut(s) 102, 392
VneI GTGCAC 1 cut(s) 510
VpaK11BI GGWCC 2 cut(s) 24, 214
VspI ATTAAT 1 cut(s) 18
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.