Rmu_sc0000058.1_g000010

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000058.1
OG0000450
Physical Location & Seq
Forward (+)
44949 .. 46947
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000058.1_g000010.1.cds

Sequence Viewer

Length: 1266 bp
atgaggcaccgtcgatttttagcaccagatcatgaatggcataaacaacgggaaccttttgataatacaagggaagagaaatgtgcaccaagaagacaatctggtgaggaaattgtagatgaacttcagggtttgaagacagttgcacatggaaagaataagaaaacccaaattatccctggatttggaacgactcacaatttgaaaaagagtagtatatttttccaattgccttattggaagacactattgttgcgccataatttggatgtgatgcatatcgaaaaaaatatttttgataatgtggttggcacaataatgaacattgatggtaaaacaaaagattctttaaatgctcgtcttgatctccaagctatggatataaggaaagcttactggcctagagaggaggatggcaaactagtttatgatccggcaccttttgaattgtcagctgttgatatcaaagctatatgtgaatggttactaaacttgaaagttcctgatggttattgttcaaatgtatctcgttggatcaatgctaaacgacgcagtatttctggcatgaagagtcatgattgccatgttttcttagagagactacttccgcttgtggtgcgagagttactacccaaaaaaccttgttttcttagagtcatgattgagctttcttacttttttagagaattgtgtgctaaagtactgagggtctcggatttggaacttctggaaaataaaattgccataactctatgcaagttagaaatgatatttcctcctgcattttttgacatcatggttcatttgtcaattcacttggcgtgggaagcaaaaatccaacaattgtatgtagatggaaaagtgagcgctcaaatgcgttctttggcccaaagtcctggaaagcaagctgtctactacaaaggttacaatatccatggatttcggttccatactgtacaacatgatgtgacgaagaaaacacaaaatagcggagttatggtcaaaggagagaaccaaattaattgtgtgccttggtatggaacccttacagacgtcgttgagctctggtatacagatcacaataaagttgtcttgtttcactgtaattggtttgacacagctaccaaaggcaaaggttataaggaagatcgttatggcatactaagtgtcaacaataagggtaagttgaatacccaagagccatttgtgctggcatcccaagcaacccaggtttattatgttgaaggaataaaaaacagtgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

421

Amino Acids

48.77

Weight (kDa)

9.11

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1140
AatII GACGTC 1 cut(s) 1056
AccB1I GGYRCC 2 cut(s) 6, 436
AccB7I CCANNNNNTGG 2 cut(s) 265, 376
AccI GTMKAC 2 cut(s) 912, 1070
AciI CCGC 2 cut(s) 608, 990
AclWI GGATC 2 cut(s) 425, 542
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 1053
AfaI GTAC 2 cut(s) 702, 957
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 4 cut(s) 185, 265, 376, 1037
AgsI TTSAA 7 cut(s) 136, 205, 446, 496, 519, 1189, 1244
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 3 cut(s) 178, 895, 1227
AluBI AGCT 8 cut(s) 374, 392, 455, 470, 667, 908, 1063, 1121
AluI AGCT 8 cut(s) 374, 392, 455, 470, 667, 908, 1063, 1121
Alw21I GWGCWC 2 cut(s) 88, 1065
Alw26I GTCTC 2 cut(s) 592, 715
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 2 cut(s) 425, 542
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 2 cut(s) 398, 885
ApaLI GTGCAC 1 cut(s) 84
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AseI ATTAAT 1 cut(s) 1020
AspLEI GCGC 2 cut(s) 258, 869
AspS9I GGNCC 1 cut(s) 886
AsuHPI GGTGA 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 6, 436
BanII GRGCYC 1 cut(s) 1065
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BbsI GAAGAC 3 cut(s) 100, 143, 248
Bbv12I GWGCWC 2 cut(s) 88, 1065
BccI CCATC 4 cut(s) 323, 407, 500, 848
BciT130I CCWGG 3 cut(s) 180, 897, 1229
BcoDI GTCTC 2 cut(s) 592, 715
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 2 cut(s) 402, 422
BfoI RGCGCY 1 cut(s) 870
BmcAI AGTACT 1 cut(s) 702
Bme1390I CCNGG 3 cut(s) 180, 897, 1229
BmgT120I GGNCC 1 cut(s) 886
BmiI GGNNCC 5 cut(s) 8, 54, 438, 947, 1042
BmrFI CCNGG 3 cut(s) 180, 897, 1229
BmsI GCATC 2 cut(s) 264, 1223
BpiI GAAGAC 3 cut(s) 100, 143, 248
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 715
BsaJI CCNNGG 4 cut(s) 178, 934, 1031, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 984, 1014
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 265, 376, 1037
Bse1I ACTGG 1 cut(s) 401
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 3 cut(s) 180, 897, 1229
BseDI CCNNGG 4 cut(s) 178, 934, 1031, 1227
BseGI GGATG 3 cut(s) 274, 418, 1214
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 4 cut(s) 185, 265, 376, 1037
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 88
BshFI GGCC 2 cut(s) 400, 887
BshNI GGYRCC 2 cut(s) 6, 436
BsiHKAI GWGCWC 2 cut(s) 88, 1065
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 4 cut(s) 185, 265, 376, 1037
BsmAI GTCTC 2 cut(s) 592, 715
BsnI GGCC 2 cut(s) 400, 887
Bso31I GGTCTC 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 88, 1065
Bsp1407I TGTACA 1 cut(s) 955
Bsp143I GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
Bsp19I CCATGG 1 cut(s) 934
BspACI CCGC 2 cut(s) 608, 990
BspANI GGCC 2 cut(s) 400, 887
BspCNI CTCAG 1 cut(s) 696
BspHI TCATGA 3 cut(s) 31, 574, 657
BspLI GGNNCC 5 cut(s) 8, 54, 438, 947, 1042
BspPI GGATC 2 cut(s) 425, 542
BspT107I GGYRCC 2 cut(s) 6, 436
BspTNI GGTCTC 1 cut(s) 715
BsrGI TGTACA 1 cut(s) 955
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 4 cut(s) 178, 934, 1031, 1227
BssMI GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
BssNAI GTATAC 1 cut(s) 1071
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 934, 1031
Bst1107I GTATAC 1 cut(s) 1071
Bst2UI CCWGG 3 cut(s) 180, 897, 1229
Bst4CI ACNGT 5 cut(s) 11, 142, 955, 1103, 1259
Bst6I CTCTTC 2 cut(s) 69, 563
BstACI GRCGYC 1 cut(s) 1053
BstAUI TGTACA 1 cut(s) 955
BstC8I GCNNGC 2 cut(s) 906, 1212
BstDEI CTNAG 4 cut(s) 592, 650, 704, 1163
BstDSI CCRYGG 1 cut(s) 934
BstF5I GGATG 3 cut(s) 274, 418, 1214
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 2 cut(s) 258, 869
BstKTI GATC 6 cut(s) 31, 367, 433, 537, 1078, 1150
BstMAI GTCTC 2 cut(s) 592, 715
BstMBI GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
BstMWI GCNNNNNNNGC 4 cut(s) 616, 827, 1207, 1220
BstNI CCWGG 3 cut(s) 180, 897, 1229
BstSCI CCNGG 3 cut(s) 178, 895, 1227
BstSLI GKGCMC 1 cut(s) 88
BstV2I GAAGAC 3 cut(s) 100, 143, 248
BstXI CCANNNNNNTGG 1 cut(s) 896
BstZ17I GTATAC 1 cut(s) 1071
BsuRI GGCC 2 cut(s) 400, 887
BtgI CCRYGG 1 cut(s) 934
BtsCI GGATG 3 cut(s) 274, 418, 1214
BtsIMutI CAGTG 2 cut(s) 1099, 1264
Cac8I GCNNGC 2 cut(s) 906, 1212
CciI TCATGA 3 cut(s) 31, 574, 657
CfoI GCGC 2 cut(s) 258, 869
Cfr13I GGNCC 1 cut(s) 886
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 701, 956
CviAII CATG 9 cut(s) 32, 149, 565, 575, 584, 658, 796, 935, 962
CviQI GTAC 2 cut(s) 701, 956
DdeI CTNAG 4 cut(s) 592, 650, 704, 1163
DpnI GATC 6 cut(s) 30, 366, 432, 536, 1077, 1149
DpnII GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
DraI TTTAAA 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 69, 563
EarI CTCTTC 2 cut(s) 69, 563
Ecl136II GAGCTC 1 cut(s) 1063
Eco130I CCWWGG 2 cut(s) 934, 1031
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 715
Eco32I GATATC 1 cut(s) 463
Eco47III AGCGCT 1 cut(s) 868
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 1063
EcoRII CCWGG 3 cut(s) 178, 895, 1227
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 2 cut(s) 934, 1031
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 2 cut(s) 934, 1031
FaeI CATG 9 cut(s) 35, 152, 568, 578, 587, 661, 799, 938, 965
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 9 cut(s) 31, 148, 564, 574, 583, 657, 795, 934, 961
FblI GTMKAC 2 cut(s) 912, 1070
FokI GGATG 3 cut(s) 281, 425, 1201
FriOI GRGCYC 1 cut(s) 1065
FspBI CTAG 2 cut(s) 402, 422
GlaI GCGC 2 cut(s) 257, 868
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 2 cut(s) 400, 887
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 558
HhaI GCGC 2 cut(s) 258, 869
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 9 cut(s) 35, 152, 568, 578, 587, 661, 799, 938, 965
Hin6I GCGC 2 cut(s) 256, 867
HinP1I GCGC 2 cut(s) 256, 867
HincII GTYRAC 1 cut(s) 1171
HindII GTYRAC 1 cut(s) 1171
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 4 cut(s) 193, 344, 571, 654
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 4 cut(s) 86, 913, 1071, 1171
Hpy188I TCNGA 1 cut(s) 715
Hpy188III TCNNGA 6 cut(s) 32, 362, 503, 575, 658, 728
Hpy8I GTNNAC 4 cut(s) 86, 913, 1071, 1171
Hpy99I CGWCG 3 cut(s) 15, 552, 1058
HpyAV CCTTC 1 cut(s) 1238
HpyCH4III ACNGT 5 cut(s) 11, 142, 955, 1103, 1259
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 5 cut(s) 86, 146, 277, 756, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 616, 827, 1207, 1220
HpyF3I CTNAG 4 cut(s) 592, 650, 704, 1163
HpySE526I ACGT 1 cut(s) 1053
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 9 cut(s) 35, 152, 568, 578, 587, 661, 799, 938, 965
HspAI GCGC 2 cut(s) 256, 867
Kzo9I GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
LweI GCATC 2 cut(s) 264, 1223
MaeI CTAG 2 cut(s) 402, 422
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 4 cut(s) 483, 624, 923, 967
MalI GATC 6 cut(s) 30, 366, 432, 536, 1077, 1149
MboI GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
MboII GAAGA 7 cut(s) 86, 105, 148, 253, 580, 985, 1157
MfeI CAATTG 2 cut(s) 227, 842
MhlI GDGCHC 2 cut(s) 88, 1065
MlyI GAGTC 3 cut(s) 187, 580, 663
MmeI TCCRAC 2 cut(s) 512, 862
MnlI CCTC 5 cut(s) 100, 400, 403, 699, 786
Mph1103I ATGCAT 1 cut(s) 279
MseI TTAA 2 cut(s) 350, 1020
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 3 cut(s) 180, 897, 1229
MunI CAATTG 2 cut(s) 227, 842
MvaI CCWGG 3 cut(s) 180, 897, 1229
MwoI GCNNNNNNNGC 4 cut(s) 616, 827, 1207, 1220
NcoI CCATGG 1 cut(s) 934
NdeII GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
NlaIII CATG 9 cut(s) 35, 152, 568, 578, 587, 661, 799, 938, 965
NlaIV GGNNCC 5 cut(s) 8, 54, 438, 947, 1042
NmuCI GTSAC 1 cut(s) 967
NsiI ATGCAT 1 cut(s) 279
PagI TCATGA 3 cut(s) 31, 574, 657
PfeI GAWTC 1 cut(s) 344
PflMI CCANNNNNTGG 2 cut(s) 265, 376
PfoI TCCNGGA 1 cut(s) 895
PleI GAGTC 3 cut(s) 187, 579, 662
PpsI GAGTC 3 cut(s) 187, 579, 662
PshBI ATTAAT 1 cut(s) 1020
PsiI TTATAA 1 cut(s) 1140
Psp124BI GAGCTC 1 cut(s) 1065
Psp6I CCWGG 3 cut(s) 178, 895, 1227
PspGI CCWGG 3 cut(s) 178, 895, 1227
PspN4I GGNNCC 5 cut(s) 8, 54, 438, 947, 1042
PspPI GGNCC 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 702, 957
RsaNI GTAC 2 cut(s) 701, 956
RseI CAYNNNNRTG 1 cut(s) 317
SacI GAGCTC 1 cut(s) 1065
SaqAI TTAA 2 cut(s) 350, 1020
Sau3AI GATC 6 cut(s) 28, 364, 430, 534, 1075, 1147
Sau96I GGNCC 1 cut(s) 886
ScaI AGTACT 1 cut(s) 702
SchI GAGTC 3 cut(s) 187, 580, 663
ScrFI CCNGG 3 cut(s) 180, 897, 1229
SduI GDGCHC 2 cut(s) 88, 1065
SfaNI GCATC 2 cut(s) 264, 1223
SmiMI CAYNNNNRTG 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 421
SsiI CCGC 2 cut(s) 608, 990
SspI AATATT 1 cut(s) 292
SspMI CTAG 2 cut(s) 402, 422
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 3 cut(s) 178, 895, 1227
StyI CCWWGG 2 cut(s) 934, 1031
TaaI ACNGT 5 cut(s) 11, 142, 955, 1103, 1259
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 2 cut(s) 13, 282
TatI WGTACW 2 cut(s) 700, 955
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 2 cut(s) 350, 1020
Tru9I TTAA 2 cut(s) 350, 1020
TscAI CASTG 2 cut(s) 1106, 1264
TseFI GTSAC 1 cut(s) 967
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 5 cut(s) 48, 135, 335, 581, 791
TspRI CASTG 2 cut(s) 1106, 1264
Van91I CCANNNNNTGG 2 cut(s) 265, 376
VneI GTGCAC 1 cut(s) 84
VspI ATTAAT 1 cut(s) 1020
XcmI CCANNNNNNNNNTGG 2 cut(s) 33, 176
XmiI GTMKAC 2 cut(s) 912, 1070
XspI CTAG 2 cut(s) 402, 422
ZraI GACGTC 1 cut(s) 1054
ZrmI AGTACT 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.