Rorug01G0074000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000450
Physical Location & Seq
Forward (+)
12007733 .. 12008867
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0074000.1

Sequence Viewer

Length: 327 bp
ATGGGGGACTCAAGTGGAAAAGTGAGGTTTATTCAGTGCCCAAAGTGCGAGAATCTTCTTCCTGAGCTAGCTAATTACTCTGTGTATCAGTGTGGTGGTTGTGGTGCTGTTCTTGGTGCCAAAAAGGAAAGGCAGATGAGTGGGAGTAGGTGTCTCAGGTTCTTGATGGTCATTGCAAACCAATGCCACAAGTCTATGTTCTTCCTTAGCTACCAGCTTAATTTCATAATCAAACCCACCTCAGCTATCAATCTTCACAAGGTAATAACTCTTTCTTTCACAATTCACAAGGTAATGATTAAGAAATTTTTGGGCACTTATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.16

Weight (kDa)

9.62

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR4-like_1st PF22910 7 - 40 1.3e-19 Enhanced disease resistance 4-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 305
AluBI AGCT 5 cut(s) 67, 71, 210, 217, 245
AluI AGCT 5 cut(s) 67, 71, 210, 217, 245
Alw26I GTCTC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 67
BaeGI GKGCMC 2 cut(s) 41, 317
BanI GGYRCC 1 cut(s) 116
BbvCI CCTCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 118
BmtI GCTAGC 1 cut(s) 71
Bpu10I CCTNAGC 3 cut(s) 63, 206, 241
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse3DI GCAATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 54, 169, 255
BseSI GKGCMC 2 cut(s) 41, 317
BshNI GGYRCC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 41, 317
BspCNI CTCAG 3 cut(s) 55, 168, 254
BspLI GGNNCC 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 63, 155, 206, 241
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstSLI GKGCMC 2 cut(s) 41, 317
BtsIMutI CAGTG 2 cut(s) 41, 95
Cac8I GCNNGC 1 cut(s) 69
CviJI RGCY 5 cut(s) 67, 71, 210, 217, 245
CviKI_1 RGCY 5 cut(s) 67, 71, 210, 217, 245
DdeI CTNAG 4 cut(s) 63, 155, 206, 241
FaiI YATR 3 cut(s) 197, 227, 321
FaqI GGGAC 1 cut(s) 20
FspBI CTAG 1 cut(s) 68
HinfI GANTC 2 cut(s) 8, 52
Hpy188III TCNNGA 2 cut(s) 62, 163
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 4 cut(s) 63, 155, 206, 241
LpnPI CCDG 3 cut(s) 75, 142, 227
MaeI CTAG 1 cut(s) 68
MboII GAAGA 4 cut(s) 47, 50, 193, 245
MhlI GDGCHC 2 cut(s) 41, 317
MluCI AATT 5 cut(s) 73, 220, 282, 305, 322
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 2 cut(s) 18, 250
MseI TTAA 2 cut(s) 219, 300
MwoI GCNNNNNNNGC 1 cut(s) 45
NheI GCTAGC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 52
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 219, 300
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 2 cut(s) 41, 317
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 5 cut(s) 73, 220, 282, 305, 322
SspMI CTAG 1 cut(s) 68
TasI AATT 5 cut(s) 73, 220, 282, 305, 322
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 219, 300
Tru9I TTAA 2 cut(s) 219, 300
TscAI CASTG 2 cut(s) 41, 95
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 2 cut(s) 41, 95
XapI RAATTY 1 cut(s) 305
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.