Rmu_sc0001323.1_g000001

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001323.1
OG0000450
Physical Location & Seq
Forward (+)
5289 .. 6040
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001323.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
atgtgtagagaacataaagacattcttcgtatacaacatggtgatgatcgggtggatgagttgcacaaaaaaaaatttgtggaatggttttctggaaagatccagcaattgtatgcagatagaaaagttagcgcccaaatgcgttctttggcccaacaacctggaaagcaagctgtctgctacaaaggttacaatatccatggatttcggttccatacagtacaacatgatgttactaagaaaacacaaaatagtggagttatggtcaaaggagagaaccagattaactgtgtgccttggtatggaacccttacagacgtagttgagctttggtatacagatcacaataaagttgtcttttttcactgtaattggtttgacacagctaccaaaggcaaagattataaggaagatcgttatgacatactaagtgtcaataataagggtaagttgaatacccaagagccatttgtgctggcatcccaagcaacccaggtttattatgttgaaggaataaaaaacagtacttggagtgtcgtggtggaaaccaaacctagaaacgtttttgaaatgcctgctaatgaagaggaaccgtatcaagaagaagaatctcagacgagtcacacatatgcaaaccgtagcgaggaagaagataatgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

221

Amino Acids

25.92

Weight (kDa)

5.87

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AccI GTMKAC 2 cut(s) 31, 335
AclI AACGTT 1 cut(s) 561
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 2 cut(s) 222, 526
AfiI CCNNNNNNNGG 2 cut(s) 302, 643
AgsI TTSAA 3 cut(s) 454, 509, 569
AjnI CCWGG 2 cut(s) 160, 492
AluBI AGCT 3 cut(s) 173, 328, 386
AluI AGCT 3 cut(s) 173, 328, 386
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 162, 494
BfaI CTAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 162, 494
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 212, 307, 591
BmrFI CCNGG 2 cut(s) 162, 494
BmsI GCATC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 199, 296, 492
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 643
BseBI CCWGG 2 cut(s) 162, 494
BseDI CCNNGG 3 cut(s) 199, 296, 492
BseGI GGATG 2 cut(s) 61, 479
BseLI CCNNNNNNNGG 2 cut(s) 302, 643
BseMII CTCAG 1 cut(s) 626
BshFI GGCC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 302, 643
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 4 cut(s) 46, 99, 340, 412
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 212, 307, 591
BspPI GGATC 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 199, 296, 492
BssMI GATC 4 cut(s) 46, 99, 340, 412
BssNAI GTATAC 2 cut(s) 32, 336
BssT1I CCWWGG 2 cut(s) 199, 296
Bst1107I GTATAC 2 cut(s) 32, 336
Bst2UI CCWGG 2 cut(s) 162, 494
Bst4CI ACNGT 6 cut(s) 220, 290, 368, 524, 594, 638
Bst6I CTCTTC 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 171, 477, 576
BstDEI CTNAG 3 cut(s) 237, 428, 612
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 61, 479
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 49, 102, 343, 415
BstMBI GATC 4 cut(s) 46, 99, 340, 412
BstMWI GCNNNNNNNGC 2 cut(s) 472, 485
BstNI CCWGG 2 cut(s) 162, 494
BstSCI CCNGG 2 cut(s) 160, 492
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 1 cut(s) 99
BstZ17I GTATAC 2 cut(s) 32, 336
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 61, 479
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 171, 477, 576
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 221, 525
CviAII CATG 3 cut(s) 38, 200, 227
CviJI RGCY 5 cut(s) 152, 173, 328, 386, 466
CviKI_1 RGCY 5 cut(s) 152, 173, 328, 386, 466
CviQI GTAC 2 cut(s) 221, 525
DdeI CTNAG 3 cut(s) 237, 428, 612
DpnI GATC 4 cut(s) 48, 101, 342, 414
DpnII GATC 4 cut(s) 46, 99, 340, 412
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 199, 296
EcoRII CCWGG 2 cut(s) 160, 492
EcoT14I CCWWGG 2 cut(s) 199, 296
ErhI CCWWGG 2 cut(s) 199, 296
FaeI CATG 3 cut(s) 41, 203, 230
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FatI CATG 3 cut(s) 37, 199, 226
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 2 cut(s) 31, 335
FokI GGATG 2 cut(s) 68, 466
FspBI CTAG 1 cut(s) 555
GlaI GCGC 1 cut(s) 133
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 152
HhaI GCGC 1 cut(s) 134
Hin1II CATG 3 cut(s) 41, 203, 230
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 2 cut(s) 608, 619
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 32, 336
Hpy188I TCNGA 1 cut(s) 615
Hpy188III TCNNGA 2 cut(s) 93, 599
Hpy8I GTNNAC 2 cut(s) 32, 336
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 6 cut(s) 220, 290, 368, 524, 594, 638
HpyCH4IV ACGT 2 cut(s) 318, 561
HpyCH4V TGCA 3 cut(s) 64, 116, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 485
HpyF3I CTNAG 3 cut(s) 237, 428, 612
HpySE526I ACGT 2 cut(s) 318, 561
Hsp92II CATG 3 cut(s) 41, 203, 230
HspAI GCGC 1 cut(s) 132
Kzo9I GATC 4 cut(s) 46, 99, 340, 412
LpnPI CCDG 9 cut(s) 78, 116, 147, 174, 293, 461, 479, 506, 588
LweI GCATC 1 cut(s) 488
MaeI CTAG 1 cut(s) 555
MaeII ACGT 2 cut(s) 318, 561
MaeIII GTNAC 3 cut(s) 188, 232, 620
MalI GATC 4 cut(s) 48, 101, 342, 414
MboI GATC 4 cut(s) 46, 99, 340, 412
MboII GAAGA 7 cut(s) 17, 422, 596, 614, 617, 659, 662
MfeI CAATTG 1 cut(s) 107
MflI RGATCY 1 cut(s) 99
MluCI AATT 3 cut(s) 74, 107, 370
MlyI GAGTC 1 cut(s) 628
MnlI CCTC 2 cut(s) 580, 637
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 42, 627
MspR9I CCNGG 2 cut(s) 162, 494
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 2 cut(s) 162, 494
MwoI GCNNNNNNNGC 2 cut(s) 472, 485
NcoI CCATGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 628
NdeII GATC 4 cut(s) 46, 99, 340, 412
NlaIII CATG 3 cut(s) 41, 203, 230
NlaIV GGNNCC 3 cut(s) 212, 307, 591
NmuCI GTSAC 1 cut(s) 620
PfeI GAWTC 1 cut(s) 608
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PsiI TTATAA 1 cut(s) 405
Psp1406I AACGTT 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 160, 492
PspGI CCWGG 2 cut(s) 160, 492
PspN4I GGNNCC 3 cut(s) 212, 307, 591
PspPI GGNCC 1 cut(s) 151
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 2 cut(s) 222, 526
RsaNI GTAC 2 cut(s) 221, 525
RseI CAYNNNNRTG 2 cut(s) 42, 627
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 4 cut(s) 46, 99, 340, 412
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 2 cut(s) 162, 494
SetI ASST 9 cut(s) 163, 175, 190, 321, 330, 388, 498, 556, 564
SfaNI GCATC 1 cut(s) 488
SmiMI CAYNNNNRTG 2 cut(s) 42, 627
Sse9I AATT 3 cut(s) 74, 107, 370
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 160, 492
StyI CCWWGG 2 cut(s) 199, 296
TaaI ACNGT 6 cut(s) 220, 290, 368, 524, 594, 638
TaiI ACGT 2 cut(s) 321, 564
TasI AATT 3 cut(s) 74, 107, 370
TatI WGTACW 2 cut(s) 220, 524
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 371
TseFI GTSAC 1 cut(s) 620
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 1 cut(s) 597
TspRI CASTG 1 cut(s) 371
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 2 cut(s) 31, 335
XspI CTAG 1 cut(s) 555
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.