Rh1CG227300

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000450
Physical Location & Seq
Reverse (-)
48094572 .. 48100595
6024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG227300.1

Sequence Viewer

Length: 810 bp
ATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCGAGTCTTCCACACGTTCACGGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTAGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCTTGCCAAAGGAGAAAAGGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAGGTCAGAGCTGCAAGGCCCATTCATAACATGGGCACAATATCCGCAAGATGAATTGGATAGGTTGTTTGACCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCTGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATGGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACAATCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTGAAGGAAACGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGACAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGATTGATAAGACTGGAGTTGAACCGAGTCCAATAGAGATGTTTAGAAGGTTTCATATTTCTAAGCCTAAAGATGGAAAACCGGAGCATTGGCAGAGTGAGAAGGCAAAGGATCTTTATGAATGTATGGAATTGCAAAAAACGTATAGAGGAGACTTTGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

269

Amino Acids

31.51

Weight (kDa)

8.6

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 168 - 257 1.2e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 565
AciI CCGC 3 cut(s) 299, 448, 565
AclWI GGATC 1 cut(s) 762
AcsI RAATTY 3 cut(s) 343, 350, 429
AcuI CTGAAG 3 cut(s) 96, 238, 557
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 2 cut(s) 255, 716
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 349, 499, 665
AluBI AGCT 3 cut(s) 230, 265, 470
AluI AGCT 3 cut(s) 230, 265, 470
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 1 cut(s) 762
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 3 cut(s) 157, 245, 271
ApeKI GCWGC 4 cut(s) 32, 265, 464, 467
ApoI RAATTY 3 cut(s) 343, 350, 429
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 246, 272
AsuHPI GGTGA 2 cut(s) 116, 425
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 48, 84
BbvI GCAGC 4 cut(s) 44, 252, 451, 479
BccI CCATC 1 cut(s) 710
BceAI ACGGC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 4 cut(s) 33, 266, 465, 468
BlsI GCNGC 4 cut(s) 34, 267, 466, 469
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 246, 272
BmiI GGNNCC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 48, 84
BpmI CTGGAG 1 cut(s) 678
BsaWI WCCGGW 1 cut(s) 724
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 716
Bse1I ACTGG 2 cut(s) 422, 661
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 2 cut(s) 255, 716
BseMII CTCAG 2 cut(s) 123, 354
BseNI ACTGG 2 cut(s) 422, 661
BseRI GAGGAG 2 cut(s) 656, 807
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 4 cut(s) 44, 252, 451, 479
BshFI GGCC 3 cut(s) 159, 247, 273
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 725
BslI CCNNNNNNNGG 2 cut(s) 255, 716
BsmAI GTCTC 1 cut(s) 789
BsmI GAATGC 2 cut(s) 196, 574
BsnI GGCC 3 cut(s) 159, 247, 273
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 754
BspACI CCGC 3 cut(s) 299, 448, 565
BspANI GGCC 3 cut(s) 159, 247, 273
BspCNI CTCAG 2 cut(s) 124, 355
BspLI GGNNCC 1 cut(s) 248
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 762
BsrBI CCGCTC 1 cut(s) 565
BsrI ACTGG 2 cut(s) 422, 661
BssMI GATC 1 cut(s) 754
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 3 cut(s) 105, 257, 551
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 132, 363, 705
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 1 cut(s) 757
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 1 cut(s) 754
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 44, 252, 451, 479
BstV2I GAAGAC 2 cut(s) 48, 84
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 1 cut(s) 510
BstYI RGATCY 1 cut(s) 754
BsuRI GGCC 3 cut(s) 159, 247, 273
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 246, 272
Csp6I GTAC 1 cut(s) 631
CviAII CATG 3 cut(s) 101, 187, 285
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 132, 363, 705
DpnI GATC 1 cut(s) 756
DpnII GATC 1 cut(s) 754
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 3 cut(s) 105, 257, 551
EarI CTCTTC 3 cut(s) 105, 257, 551
Eco147I AGGCCT 1 cut(s) 159
Eco57I CTGAAG 3 cut(s) 96, 238, 557
Eco88I CYCGRG 1 cut(s) 50
FaeI CATG 3 cut(s) 104, 190, 288
FatI CATG 3 cut(s) 100, 186, 284
Fnu4HI GCNGC 4 cut(s) 33, 266, 465, 468
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 33, 266, 465, 468
FspBI CTAG 1 cut(s) 125
GluI GCNGC 4 cut(s) 33, 266, 465, 468
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 3 cut(s) 159, 247, 273
HapII CCGG 1 cut(s) 725
Hin1II CATG 3 cut(s) 104, 190, 288
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 4 cut(s) 53, 92, 403, 670
HpaII CCGG 1 cut(s) 725
HphI GGTGA 2 cut(s) 116, 425
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 4 cut(s) 76, 262, 364, 435
Hpy188III TCNNGA 3 cut(s) 50, 400, 581
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 4 cut(s) 113, 532, 684, 739
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 3 cut(s) 64, 545, 785
HpyCH4V TGCA 6 cut(s) 194, 268, 467, 572, 601, 778
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 3 cut(s) 132, 363, 705
HpySE526I ACGT 3 cut(s) 64, 545, 785
Hsp92II CATG 3 cut(s) 104, 190, 288
Kzo9I GATC 1 cut(s) 754
LmnI GCTCC 1 cut(s) 727
LpnPI CCDG 6 cut(s) 241, 403, 516, 536, 642, 738
Lsp1109I GCAGC 4 cut(s) 44, 252, 451, 479
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 64, 545, 785
MaeIII GTNAC 3 cut(s) 104, 413, 581
MalI GATC 1 cut(s) 756
MbiI CCGCTC 1 cut(s) 565
MboI GATC 1 cut(s) 754
MboII GAAGA 7 cut(s) 48, 89, 122, 244, 346, 380, 568
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 6 cut(s) 308, 343, 350, 429, 573, 773
MlyI GAGTC 3 cut(s) 62, 397, 679
MnlI CCTC 9 cut(s) 106, 127, 138, 149, 204, 260, 358, 634, 785
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 576
MspI CCGG 1 cut(s) 725
Mva1269I GAATGC 2 cut(s) 196, 574
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 1 cut(s) 754
NlaIII CATG 3 cut(s) 104, 190, 288
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 3 cut(s) 104, 413, 581
PaeR7I CTCGAG 1 cut(s) 50
PceI AGGCCT 1 cut(s) 159
PctI GAATGC 2 cut(s) 196, 574
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 34, 267, 466, 469
PleI GAGTC 3 cut(s) 61, 397, 678
PpsI GAGTC 3 cut(s) 61, 397, 678
PshBI ATTAAT 1 cut(s) 576
PsiI TTATAA 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 246, 272
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 754
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 33, 266, 465, 468
Sau3AI GATC 1 cut(s) 754
Sau96I GGNCC 2 cut(s) 246, 272
SchI GAGTC 3 cut(s) 62, 397, 679
SduI GDGCHC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 6 cut(s) 308, 343, 350, 429, 573, 773
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 3 cut(s) 299, 448, 565
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 159
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 3 cut(s) 67, 548, 788
TaqI TCGA 2 cut(s) 51, 472
TasI AATT 6 cut(s) 308, 343, 350, 429, 573, 773
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseFI GTSAC 3 cut(s) 104, 413, 581
TseI GCWGC 4 cut(s) 32, 265, 464, 467
Tsp45I GTSAC 3 cut(s) 104, 413, 581
TspDTI ATGAA 7 cut(s) 105, 203, 268, 321, 543, 686, 777
TspGWI ACGGA 2 cut(s) 404, 477
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 3 cut(s) 343, 350, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.