Rh4DG092800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000450
Physical Location & Seq
Reverse (-)
13988918 .. 13989441
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG092800.1

Sequence Viewer

Length: 420 bp
ATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCAAGTCTTCCACACGTTCACAGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTGGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCCTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAAGTCAGAGCTGCAAGGCCCATTCATAACATGGGCACAGTATCCGCAAGATCAATTGGATACGTTGTTTGACCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATAGTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

7.81

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AciI CCGC 1 cut(s) 299
AcsI RAATTY 2 cut(s) 343, 350
AcuI CTGAAG 1 cut(s) 96
AdeI CACNNNGTG 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 256, 349
AluBI AGCT 2 cut(s) 230, 265
AluI AGCT 2 cut(s) 230, 265
AoxI GGCC 3 cut(s) 157, 245, 271
ApeKI GCWGC 2 cut(s) 32, 265
ApoI RAATTY 2 cut(s) 343, 350
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 3 cut(s) 158, 246, 272
AsuHPI GGTGA 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 48, 84
BbvI GCAGC 2 cut(s) 44, 252
BceAI ACGGC 1 cut(s) 199
BciVI GTATCC 2 cut(s) 306, 307
BfaI CTAG 1 cut(s) 418
BfuI GTATCC 2 cut(s) 306, 307
BisI GCNGC 2 cut(s) 33, 266
BlsI GCNGC 2 cut(s) 34, 267
BmgT120I GGNCC 3 cut(s) 158, 246, 272
BmiI GGNNCC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 48, 84
BpuEI CTTGAG 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 44, 252
BshFI GGCC 3 cut(s) 159, 247, 273
BslI CCNNNNNNNGG 1 cut(s) 167
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 3 cut(s) 159, 247, 273
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 299
BspANI GGCC 3 cut(s) 159, 247, 273
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 72, 294
Bst6I CTCTTC 2 cut(s) 105, 257
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 165
BstKTI GATC 1 cut(s) 307
BstMBI GATC 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 44, 252
BstV2I GAAGAC 2 cut(s) 48, 84
BsuI GTATCC 2 cut(s) 306, 307
BsuRI GGCC 3 cut(s) 159, 247, 273
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 3 cut(s) 158, 246, 272
CviAII CATG 3 cut(s) 101, 187, 285
CviJI RGCY 8 cut(s) 124, 137, 159, 180, 230, 247, 265, 273
CviKI_1 RGCY 8 cut(s) 124, 137, 159, 180, 230, 247, 265, 273
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 105, 257
EarI CTCTTC 2 cut(s) 105, 257
Eco57I CTGAAG 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 158
FaeI CATG 3 cut(s) 104, 190, 288
FaiI YATR 9 cut(s) 102, 188, 204, 218, 281, 286, 331, 396, 411
FatI CATG 3 cut(s) 100, 186, 284
Fnu4HI GCNGC 2 cut(s) 33, 266
Fsp4HI GCNGC 2 cut(s) 33, 266
FspBI CTAG 1 cut(s) 418
GluI GCNGC 2 cut(s) 33, 266
HaeIII GGCC 3 cut(s) 159, 247, 273
Hin1II CATG 3 cut(s) 104, 190, 288
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 2 cut(s) 92, 403
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 76, 262, 364
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 72, 294
HpyCH4IV ACGT 2 cut(s) 64, 317
HpyCH4V TGCA 2 cut(s) 194, 268
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 64, 317
Hsp92II CATG 3 cut(s) 104, 190, 288
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 2 cut(s) 110, 174
Lsp1109I GCAGC 2 cut(s) 44, 252
MaeI CTAG 1 cut(s) 418
MaeII ACGT 2 cut(s) 64, 317
MaeIII GTNAC 2 cut(s) 104, 413
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 6 cut(s) 48, 89, 122, 244, 346, 380
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 3 cut(s) 308, 343, 350
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 7 cut(s) 106, 127, 138, 149, 204, 260, 358
MroXI GAANNNNTTC 1 cut(s) 81
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 196
NdeII GATC 1 cut(s) 304
NlaIII CATG 3 cut(s) 104, 190, 288
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 104, 413
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 34, 267
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PsiI TTATAA 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 3 cut(s) 158, 246, 272
SatI GCNGC 2 cut(s) 33, 266
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 3 cut(s) 158, 246, 272
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 67, 117, 154, 232, 267, 320, 330
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 308, 343, 350
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 72, 294
TaiI ACGT 2 cut(s) 67, 320
TasI AATT 3 cut(s) 308, 343, 350
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 2 cut(s) 104, 413
TseI GCWGC 2 cut(s) 32, 265
Tsp45I GTSAC 2 cut(s) 104, 413
TspDTI ATGAA 3 cut(s) 105, 203, 268
TspGWI ACGGA 1 cut(s) 404
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 2 cut(s) 343, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.