Rroxscaffold_1G00029250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Reverse (-)
37802873 .. 37803693
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029250.1

Sequence Viewer

Length: 204 bp
ATGGGGGCACCAATGGTTGATGAATGGCTAAAGGAAACGTGGCAGCAAATTGATAAGACCGGAGTTGAACTAAGCCTAATAGAGATGTTTAGAAGGTTTCATGTTTCTAAGACTAAAGACGGAAAGCCAAAACATTGGCTGAGTGAGAGGGCAAAGGATCTTTATGCGCGTGCTTGGAACGTGACAAAGAGTTTGGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.96

Weight (kDa)

9.4

Isoelectric Point (pI)

24.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 1 cut(s) 169
AclWI GGATC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 68
AlwI GGATC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 43
ArsI GACNNNNNNTTYG 1 cut(s) 175
AspLEI GCGC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 55
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 59
BseMII CTCAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 7
BssMI GATC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 71, 108, 140
BstFNI CGCG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 157
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 169
CviAII CATG 1 cut(s) 101
CviJI RGCY 4 cut(s) 28, 75, 127, 139
CviKI_1 RGCY 4 cut(s) 28, 75, 127, 139
DdeI CTNAG 3 cut(s) 71, 108, 140
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
FaeI CATG 1 cut(s) 104
FaiI YATR 2 cut(s) 102, 165
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
GlaI GCGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 44
HapII CCGG 1 cut(s) 60
HhaI GCGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 104
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HpaII CCGG 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 87
HpyCH4IV ACGT 2 cut(s) 38, 180
HpyF3I CTNAG 3 cut(s) 71, 108, 140
HpySE526I ACGT 2 cut(s) 38, 180
Hsp92II CATG 1 cut(s) 104
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 55
MaeII ACGT 2 cut(s) 38, 180
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 1 cut(s) 48
MnlI CCTC 1 cut(s) 141
MspI CCGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 169
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 157
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 10
SetI ASST 3 cut(s) 41, 98, 183
SgeI CNNG 7 cut(s) 51, 72, 113, 180, 182, 186, 193
Sse9I AATT 1 cut(s) 48
TaiI ACGT 2 cut(s) 41, 183
TasI AATT 1 cut(s) 48
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 2 cut(s) 36, 89
TspGWI ACGGA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.