RchiOBHm_Chr5g0079051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000450
Physical Location & Seq
Forward (+)
84803622 .. 84805710
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35353

Sequence Viewer

Length: 552 bp
ATGGTGCATACAACCGGCTCAGTTCCAATGGCGAAATATATCAAAGAGGAGATTGATAGGACTGGAGTTGAACCTAGTCCCATTGAATGCTTCAAAAGGTTTCATGTCTCTAAGGCCAAGAATGAAGAGGGGGAACATTGGATTAGTGAGAAAGCTAAAGATCTTTATGAAACTATGCATACCCAAAAGAGGCTCGAAGAGGCATTTGGTGAAGAAAGTGAAGAAGTAGATGAATGGGGCATATATAAAGCTGTGATTGGAGGGCCGAGTCACGGCAGAATTCGTGGCTTAGGTGATGGCATGATACCACCTAAAGATGAAGATGTGGACTCTTCTAGCCACACTTGCAATAAGCGTCCATGCATGGCGCGTGAGAAAGAATTGGAACAAGTGAACGAGAAAGTTACAACCCTTACCAACCAGCTAGAAGATTTGAAGCAAGTGGTTATGACTTTGCTATCGAAGAACTCAACTCATTCTGAATGCGCAACAGAAGCACCATCTACGGGAAATACCACAGGGACCTCAGGTGCAAATCATGAAGACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.38

Weight (kDa)

5.13

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 100 3e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 487
AccII CGCG 1 cut(s) 370
AcsI RAATTY 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 189, 272, 506
AgsI TTSAA 4 cut(s) 71, 86, 94, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 155, 251, 424
AluI AGCT 3 cut(s) 155, 251, 424
Alw26I GTCTC 1 cut(s) 112
AoxI GGCC 2 cut(s) 114, 263
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 2 cut(s) 370, 488
AspS9I GGNCC 2 cut(s) 263, 522
AsuHPI GGTGA 2 cut(s) 221, 305
AvaII GGWCC 1 cut(s) 522
AxyI CCTNAGG 1 cut(s) 526
BccI CCATC 2 cut(s) 290, 508
BceAI ACGGC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 3 cut(s) 75, 336, 425
BglII AGATCT 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 263, 522
BmiI GGNNCC 1 cut(s) 523
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 289
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 272, 506
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 67
Bse21I CCTNAGG 1 cut(s) 526
BseLI CCNNNNNNNGG 3 cut(s) 189, 272, 506
BseMII CTCAG 2 cut(s) 33, 540
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 116, 265
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 2 cut(s) 63, 535
BslI CCNNNNNNNGG 3 cut(s) 189, 272, 506
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 2 cut(s) 63, 535
BsmI GAATGC 2 cut(s) 92, 488
BsnI GGCC 2 cut(s) 116, 265
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 2 cut(s) 116, 265
BspCNI CTCAG 2 cut(s) 32, 539
BspFNI CGCG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 1 cut(s) 160
Bst6I CTCTTC 3 cut(s) 120, 192, 337
BstDEI CTNAG 4 cut(s) 19, 111, 289, 526
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 2 cut(s) 370, 488
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 345, 494
BstUI CGCG 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 526
BsuRI GGCC 2 cut(s) 116, 265
CciI TCATGA 1 cut(s) 538
CfoI GCGC 2 cut(s) 370, 488
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 263, 522
CseI GACGC 1 cut(s) 344
CviAII CATG 6 cut(s) 104, 301, 360, 364, 539, 549
CviJI RGCY 9 cut(s) 18, 116, 155, 193, 251, 265, 288, 339, 424
CviKI_1 RGCY 9 cut(s) 18, 116, 155, 193, 251, 265, 288, 339, 424
DdeI CTNAG 4 cut(s) 19, 111, 289, 526
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eam1104I CTCTTC 3 cut(s) 120, 192, 337
EarI CTCTTC 3 cut(s) 120, 192, 337
Eco47I GGWCC 1 cut(s) 522
Eco81I CCTNAGG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 279
EcoT22I ATGCAT 2 cut(s) 180, 365
FaeI CATG 6 cut(s) 107, 304, 363, 367, 542, 552
FaqI GGGAC 2 cut(s) 63, 535
FatI CATG 6 cut(s) 103, 300, 359, 363, 538, 548
FspBI CTAG 3 cut(s) 75, 336, 425
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 2 cut(s) 369, 487
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 2 cut(s) 116, 265
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 344
HhaI GCGC 2 cut(s) 370, 488
Hin1II CATG 6 cut(s) 107, 304, 363, 367, 542, 552
Hin6I GCGC 2 cut(s) 368, 486
HinP1I GCGC 2 cut(s) 368, 486
HinfI GANTC 2 cut(s) 268, 329
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 221, 305
Hpy166II GTNNAC 2 cut(s) 328, 394
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 2 cut(s) 328, 394
HpyCH4V TGCA 5 cut(s) 7, 178, 348, 363, 533
HpyF10VI GCNNNNNNNGC 2 cut(s) 345, 494
HpyF3I CTNAG 4 cut(s) 19, 111, 289, 526
Hsp92II CATG 6 cut(s) 107, 304, 363, 367, 542, 552
HspAI GCGC 2 cut(s) 368, 486
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 28, 48, 434, 504, 513
MaeI CTAG 3 cut(s) 75, 336, 425
MaeIII GTNAC 2 cut(s) 269, 403
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 8 cut(s) 137, 209, 224, 233, 324, 332, 440, 475
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 279, 380
MlyI GAGTC 2 cut(s) 277, 323
MnlI CCTC 6 cut(s) 40, 121, 183, 193, 254, 535
Mph1103I ATGCAT 2 cut(s) 180, 365
MspI CCGG 1 cut(s) 15
Mva1269I GAATGC 2 cut(s) 92, 488
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 345, 494
NdeII GATC 1 cut(s) 160
NlaIII CATG 6 cut(s) 107, 304, 363, 367, 542, 552
NlaIV GGNNCC 1 cut(s) 523
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 269
NsbI TGCGCA 1 cut(s) 487
NsiI ATGCAT 2 cut(s) 180, 365
PagI TCATGA 1 cut(s) 538
PctI GAATGC 2 cut(s) 92, 488
PleI GAGTC 2 cut(s) 276, 323
PpsI GAGTC 2 cut(s) 276, 323
PpuMI RGGWCCY 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 522
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 2 cut(s) 263, 522
PspPPI RGGWCCY 1 cut(s) 522
PsuI RGATCY 1 cut(s) 160
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 263, 522
SchI GAGTC 2 cut(s) 277, 323
SetI ASST 9 cut(s) 76, 101, 157, 253, 295, 313, 426, 527, 532
SinI GGWCC 1 cut(s) 522
Sse9I AATT 2 cut(s) 279, 380
SspMI CTAG 3 cut(s) 75, 336, 425
TaqI TCGA 2 cut(s) 195, 461
TasI AATT 2 cut(s) 279, 380
TseFI GTSAC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 5 cut(s) 92, 138, 183, 246, 333
VpaK11BI GGWCC 1 cut(s) 522
XapI RAATTY 1 cut(s) 279
XspI CTAG 3 cut(s) 75, 336, 425
Zsp2I ATGCAT 2 cut(s) 180, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.