Rmu_sc0003835.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003835.1
OG0000450
Physical Location & Seq
Reverse (-)
46835 .. 47209
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003835.1_g000012.1.cds

Sequence Viewer

Length: 375 bp
atgcatacccaaaagaggctcgaagaggcatttggtgaagaaagtgaagaagtagatgaatggggcatatataaagctgtgattggaaggccgagtcacggcagaattcgtggcttaggtgatggcatgataccacctgaagatgaagatgtggactcttctagccacacttgcaataagcgtccatgcatggcgcgtgagaaagaattcgaaaaagtgaacgagagagttacaactcttaccaaccaactagaagatttgaagcaagtggttatgactttgctatcaaagaactcaactcattctgaatgcacaacagaagcaccatcaactgtaactttcttttcatttgcactccaaattctaacctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.99

Weight (kDa)

4.97

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 196
AcsI RAATTY 3 cut(s) 105, 206, 360
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 2 cut(s) 15, 98
AgsI TTSAA 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 3 cut(s) 105, 206, 360
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 47, 131
AsuII TTCGAA 1 cut(s) 210
BccI CCATC 2 cut(s) 116, 334
BceAI ACGGC 1 cut(s) 115
BfaI CTAG 2 cut(s) 162, 251
Bpu10I CCTNAGC 1 cut(s) 115
Bpu14I TTCGAA 1 cut(s) 210
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 98
BseLI CCNNNNNNNGG 2 cut(s) 15, 98
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 15, 98
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 210
BspANI GGCC 1 cut(s) 91
BspFNI CGCG 1 cut(s) 196
BspT104I TTCGAA 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 18, 163
BstBI TTCGAA 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 115, 372
BstFNI CGCG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstUI CGCG 1 cut(s) 196
BsuRI GGCC 1 cut(s) 91
CfoI GCGC 1 cut(s) 196
CseI GACGC 1 cut(s) 170
CviAII CATG 3 cut(s) 127, 186, 190
CviJI RGCY 5 cut(s) 19, 77, 91, 114, 165
CviKI_1 RGCY 5 cut(s) 19, 77, 91, 114, 165
DdeI CTNAG 2 cut(s) 115, 372
Eam1104I CTCTTC 2 cut(s) 18, 163
EarI CTCTTC 2 cut(s) 18, 163
Eco57I CTGAAG 1 cut(s) 159
EcoRI GAATTC 2 cut(s) 105, 206
EcoT22I ATGCAT 2 cut(s) 6, 191
FaeI CATG 3 cut(s) 130, 189, 193
FaiI YATR 8 cut(s) 6, 68, 70, 72, 128, 187, 191, 275
FatI CATG 3 cut(s) 126, 185, 189
FspBI CTAG 2 cut(s) 162, 251
GlaI GCGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 91
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 196
Hin1II CATG 3 cut(s) 130, 189, 193
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 2 cut(s) 94, 155
HphI GGTGA 2 cut(s) 47, 131
Hpy166II GTNNAC 2 cut(s) 154, 220
Hpy188I TCNGA 1 cut(s) 307
Hpy8I GTNNAC 2 cut(s) 154, 220
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 5 cut(s) 4, 174, 189, 312, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 115, 372
Hsp92II CATG 3 cut(s) 130, 189, 193
HspAI GCGC 1 cut(s) 194
LpnPI CCDG 1 cut(s) 150
MaeI CTAG 2 cut(s) 162, 251
MaeIII GTNAC 3 cut(s) 95, 229, 334
MboII GAAGA 7 cut(s) 35, 50, 59, 150, 152, 158, 266
MluCI AATT 3 cut(s) 105, 206, 360
MlyI GAGTC 2 cut(s) 103, 149
MnlI CCTC 2 cut(s) 9, 19
Mph1103I ATGCAT 2 cut(s) 6, 191
MroXI GAANNNNTTC 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 314
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 3 cut(s) 130, 189, 193
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 2 cut(s) 6, 191
NspV TTCGAA 1 cut(s) 210
PctI GAATGC 1 cut(s) 314
PdmI GAANNNNTTC 1 cut(s) 206
PleI GAGTC 2 cut(s) 102, 149
PpsI GAGTC 2 cut(s) 102, 149
SchI GAGTC 2 cut(s) 103, 149
SetI ASST 4 cut(s) 79, 121, 139, 371
SfuI TTCGAA 1 cut(s) 210
Sse9I AATT 3 cut(s) 105, 206, 360
SspMI CTAG 2 cut(s) 162, 251
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 2 cut(s) 21, 210
TasI AATT 3 cut(s) 105, 206, 360
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 3 cut(s) 72, 159, 336
XapI RAATTY 3 cut(s) 105, 206, 360
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 162, 251
Zsp2I ATGCAT 2 cut(s) 6, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.