Rroxscaffold_7G00197810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000450
Physical Location & Seq
Reverse (-)
42393481 .. 42399607
6127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00197810.1

Sequence Viewer

Length: 315 bp
ATGAACAAAATATTTCCGACGGCTACTGACCCTTGGAAATATTTCTCTAAATTAGTGAAGTGGAGTGGATCGGAATCGCTGTTGATTCATTCTTTCGGTGCAGTGTGGCAAGCAAAAGCAAAATTAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTGCCTAATACCTCAGACAATTCTAAAGCAAGAAACTCACATTCTGTGGACAATATTGCAACAGATTCAAGTGCACACCATGATGAAGATAGTACTGATGAAGATGTTGCTGATGACTATGATGCAAACTCTAATGAGGACTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

4.68

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AfaI GTAC 1 cut(s) 259
AgsI TTSAA 2 cut(s) 158, 234
Alw21I GWGCWC 1 cut(s) 241
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 1 cut(s) 76
ApaLI GTGCAC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BmcAI AGTACT 1 cut(s) 259
BmsI GCATC 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 73
BseMII CTCAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 191
BspPI GGATC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 178
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 245
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 1 cut(s) 248
FaiI YATR 2 cut(s) 246, 285
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 248
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 4 cut(s) 74, 85, 145, 230
Hpy166II GTNNAC 3 cut(s) 144, 214, 239
Hpy188I TCNGA 3 cut(s) 18, 73, 181
Hpy8I GTNNAC 3 cut(s) 144, 214, 239
Hpy99I CGWCG 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 101, 224, 239, 290
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 68
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 277
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 2 cut(s) 263, 278
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 5 cut(s) 50, 122, 131, 150, 184
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 187, 295
MroXI GAANNNNTTC 1 cut(s) 41
MslI CAYNNNNRTG 1 cut(s) 246
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 41
PfeI GAWTC 3 cut(s) 74, 85, 230
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 259
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 241
SetI ASST 1 cut(s) 179
SfaNI GCATC 1 cut(s) 277
SgeI CNNG 6 cut(s) 45, 122, 151, 207, 246, 257
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 5 cut(s) 50, 122, 131, 150, 184
SspI AATATT 3 cut(s) 12, 41, 220
StyI CCWWGG 1 cut(s) 32
TasI AATT 5 cut(s) 50, 122, 131, 150, 184
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 3 cut(s) 74, 85, 230
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 17, 77, 264, 279
TspRI CASTG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.