FvH4_2g16992

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000450
Physical Location & Seq
Forward (+)
14738884 .. 14739906
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16992.t1

Sequence Viewer

Length: 372 bp
ATGGAAGAGGTGTTTGGTGAAGTTGATCATTGGGAGATATATGAGAAAATCATTCGTGAGCATAGTCATGGCCGTGCACTTGGGTTAGGTGTTGGGGCCAAACTCAAAGATATCAATTCACATAACCAAACTTGTATAAGCCTACATGATAATATTATTGCAACGGATTCAAGTGCATTCCATGATGAAGATGGTTTTTATGAAAATGGTATTGATGGAGATGGTACTGATAGAGATGATACTTATGGAGATGGTGTTGATGATACTGATGGATATGGCGTTGATGAAGATGGGACTGATGGAGATGGTGTTGATGAAGATGGTGTTGATGGTAATGCCAACTTTCATGAGGTGTTTTACAGCCGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.49

Weight (kDa)

4.05

Isoelectric Point (pI)

10.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 70
AfaI GTAC 1 cut(s) 226
AgsI TTSAA 1 cut(s) 171
AjuI GAANNNNNNNTTGG 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AoxI GGCC 2 cut(s) 70, 96
ApaLI GTGCAC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 57
BclI TGATCA 1 cut(s) 25
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 294, 324
BseSI GKGCMC 1 cut(s) 79
BshFI GGCC 2 cut(s) 72, 98
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 2 cut(s) 72, 98
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 1 cut(s) 364
BspANI GGCC 2 cut(s) 72, 98
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 97
BssMI GATC 1 cut(s) 25
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 79
BsuRI GGCC 2 cut(s) 72, 98
CciI TCATGA 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 225
CviAII CATG 4 cut(s) 68, 146, 182, 347
CviJI RGCY 4 cut(s) 72, 98, 141, 363
CviKI_1 RGCY 4 cut(s) 72, 98, 141, 363
CviQI GTAC 1 cut(s) 225
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 70
Eco32I GATATC 1 cut(s) 112
EcoRV GATATC 1 cut(s) 112
FaeI CATG 4 cut(s) 71, 149, 185, 350
FaqI GGGAC 1 cut(s) 307
FatI CATG 4 cut(s) 67, 145, 181, 346
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 364
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 2 cut(s) 72, 98
Hin1II CATG 4 cut(s) 71, 149, 185, 350
HinfI GANTC 1 cut(s) 167
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 56, 347
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 77, 161, 176
Hsp92II CATG 4 cut(s) 71, 149, 185, 350
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 4 cut(s) 17, 200, 299, 329
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 115
MnlI CCTC 1 cut(s) 343
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 2 cut(s) 66, 72
Mva1269I GAATGC 1 cut(s) 176
NdeII GATC 1 cut(s) 25
NlaIII CATG 4 cut(s) 71, 149, 185, 350
NlaIV GGNNCC 1 cut(s) 97
PagI TCATGA 1 cut(s) 346
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 66, 72
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 79
SetI ASST 3 cut(s) 12, 91, 354
SgeI CNNG 9 cut(s) 68, 80, 86, 92, 144, 158, 183, 194, 359
SmiMI CAYNNNNRTG 2 cut(s) 66, 72
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 364
SspI AATATT 1 cut(s) 154
TasI AATT 1 cut(s) 115
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TspDTI ATGAA 5 cut(s) 201, 216, 300, 330, 335
TspGWI ACGGA 1 cut(s) 179
VneI GTGCAC 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.