Rroxscaffold_1G00031660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Forward (+)
44868436 .. 44872222
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031660.1

Sequence Viewer

Length: 372 bp
ATGAGCGCAATAAGGAATAGCATTTTCAAAAAGCATAAAACCGCTGCAGCTCGTTATGCTAATTGCCCAAAAGGAATAAAGCCAAATGTGTGGGCCCAATTGGTTGAAGAATGGTTGAAACCTGAATGGCAGCTTGATCGAAATGGAGTCGAACCTAGCCCAATAGAGTGTTGGAGGAAGTTCCATAATAGAGTGGAAGAGGTGCTTGGTGAAGCTGATGATTGGGAAATATATCAGAAAGTGCATGGTGGGCCTAGTCATGGTCGTGTACTTGGTTTACGTCTTGGGGTGAAACTAAAAGATTACACTTCACCTAACCAAACTTGTAATAAGCCTACATGTTTGGAACAAAAGAAGATTATGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

9.23

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 3 cut(s) 28, 107, 118
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 3 cut(s) 50, 133, 215
AluI AGCT 3 cut(s) 50, 133, 215
AoxI GGCC 2 cut(s) 93, 251
ApaI GGGCCC 1 cut(s) 97
ApeKI GCWGC 3 cut(s) 44, 47, 130
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 93, 94, 251
AsuHPI GGTGA 3 cut(s) 221, 301, 303
BaeGI GKGCMC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 31, 59, 142
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BfaI CTAG 2 cut(s) 156, 255
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 3 cut(s) 45, 48, 131
BlsI GCNGC 3 cut(s) 46, 49, 132
BmgT120I GGNCC 3 cut(s) 93, 94, 251
BmiI GGNNCC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 3 cut(s) 31, 59, 142
BshFI GGCC 2 cut(s) 95, 253
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 2 cut(s) 95, 253
Bsp120I GGGCCC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 95, 253
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 49
BssMI GATC 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 192
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 56, 250
BstNSI RCATGY 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 3 cut(s) 31, 59, 142
BstXI CCANNNNNNTGG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 95, 253
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 93, 94, 251
Csp6I GTAC 1 cut(s) 269
CviAII CATG 3 cut(s) 245, 260, 339
CviJI RGCY 8 cut(s) 50, 82, 95, 133, 159, 215, 253, 334
CviKI_1 RGCY 8 cut(s) 50, 82, 95, 133, 159, 215, 253, 334
CviQI GTAC 1 cut(s) 269
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 3 cut(s) 248, 263, 342
FaiI YATR 8 cut(s) 36, 57, 186, 232, 246, 261, 340, 362
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 3 cut(s) 244, 259, 338
Fnu4HI GCNGC 3 cut(s) 45, 48, 131
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 45, 48, 131
FspBI CTAG 2 cut(s) 156, 255
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 45, 48, 131
HaeIII GGCC 2 cut(s) 95, 253
HhaI GCGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 248, 263, 342
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 147
HphI GGTGA 3 cut(s) 221, 301, 303
Hpy166II GTNNAC 2 cut(s) 269, 278
Hpy188I TCNGA 1 cut(s) 237
Hpy8I GTNNAC 2 cut(s) 269, 278
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 47, 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 250
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 3 cut(s) 248, 263, 342
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 1 cut(s) 135
Lsp1109I GCAGC 3 cut(s) 31, 59, 142
MaeI CTAG 2 cut(s) 156, 255
MaeII ACGT 1 cut(s) 280
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 3 cut(s) 119, 209, 367
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 61, 98
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 2 cut(s) 168, 193
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 44
MunI CAATTG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 56, 250
NdeII GATC 1 cut(s) 136
NlaIII CATG 3 cut(s) 248, 263, 342
NlaIV GGNNCC 1 cut(s) 95
NspI RCATGY 1 cut(s) 342
PciI ACATGT 1 cut(s) 338
PkrI GCNGC 3 cut(s) 46, 49, 132
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PscI ACATGT 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 95
PspOMI GGGCCC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 93, 94, 251
PstI CTGCAG 1 cut(s) 49
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 264
SatI GCNGC 3 cut(s) 45, 48, 131
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 3 cut(s) 93, 94, 251
SchI GAGTC 1 cut(s) 156
SduI GDGCHC 1 cut(s) 97
SetI ASST 8 cut(s) 52, 124, 135, 157, 204, 217, 283, 316
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 61, 98
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 156, 255
TaiI ACGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 139, 150
TasI AATT 2 cut(s) 61, 98
TatI WGTACW 1 cut(s) 268
TseI GCWGC 3 cut(s) 44, 47, 130
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XspI CTAG 2 cut(s) 156, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.