Rorug05G0234600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000450
Physical Location & Seq
Forward (+)
24584355 .. 24584907
553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0234600.1

Sequence Viewer

Length: 351 bp
ATGAAGGTGGTTGCTGCCTATTTGCTTGCTGTTCTGGGAGGGAACACCAGTCCCTCTGCTGATGATGTGAAGAAGATTCTCGGATCGGTTGGAGCCGATGCCGATAGCGATAGGATCGAGTTGCTGTTGTCTCAATTAAAAGGAAAAGATGTCGCCGAGGTAGTTGCCTCCGGAAGAGAGAAGTTGGCATCTGTGCCTTCTGGTGGCGCAGTTGCTGGTGTCGCACCAGCAGCCGGCACCGCTGGTGCTGCAGCTACTGCTGCTGGCGAGCAGAAGAAGGAAGAGAAGGTTGAAGACGAAGAGGAAGAAGATGATGCAGATATTGGTGGTCTCTTTGGCGACGACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

11.51

Weight (kDa)

4.21

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 112 5.3e-21 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 1 cut(s) 240
AclWI GGATC 2 cut(s) 91, 122
AfiI CCNNNNNNNGG 2 cut(s) 203, 233
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 135, 335
AlwI GGATC 2 cut(s) 91, 122
AlwNI CAGNNNCTG 2 cut(s) 215, 257
Aor13HI TCCGGA 1 cut(s) 170
ApeKI GCWGC 5 cut(s) 14, 230, 248, 251, 260
AspLEI GCGC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 4 cut(s) 235, 242, 247, 263
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcoDI GTCTC 2 cut(s) 135, 335
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 5 cut(s) 15, 231, 249, 252, 261
BlsI GCNGC 5 cut(s) 16, 232, 250, 253, 262
BmiI GGNNCC 2 cut(s) 94, 238
BmsI GCATC 3 cut(s) 88, 197, 304
BpiI GAAGAC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 203, 233
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 235, 242, 247, 263
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 171, 234
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 203, 233
BsmAI GTCTC 2 cut(s) 135, 335
BsmFI GGGAC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 2 cut(s) 83, 114
BspACI CCGC 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 94, 238
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 2 cut(s) 91, 122
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 83, 114
Bst6I CTCTTC 3 cut(s) 169, 276, 294
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 4 cut(s) 27, 235, 265, 269
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 2 cut(s) 86, 117
BstMAI GTCTC 2 cut(s) 135, 335
BstMBI GATC 2 cut(s) 83, 114
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 235, 242, 247, 263
BstV2I GAAGAC 1 cut(s) 300
Cac8I GCNNGC 4 cut(s) 27, 235, 265, 269
CaiI CAGNNNCTG 2 cut(s) 215, 257
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 233
CviJI RGCY 3 cut(s) 95, 233, 254
CviKI_1 RGCY 3 cut(s) 95, 233, 254
DpnI GATC 2 cut(s) 85, 116
DpnII GATC 2 cut(s) 83, 114
Eam1104I CTCTTC 3 cut(s) 169, 276, 294
EarI CTCTTC 3 cut(s) 169, 276, 294
Eco31I GGTCTC 1 cut(s) 335
FaqI GGGAC 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 15, 231, 249, 252, 261
Fsp4HI GCNGC 5 cut(s) 15, 231, 249, 252, 261
GlaI GCGC 1 cut(s) 208
GluI GCNGC 5 cut(s) 15, 231, 249, 252, 261
HapII CCGG 2 cut(s) 171, 234
HhaI GCGC 1 cut(s) 209
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 1 cut(s) 76
HpaII CCGG 2 cut(s) 171, 234
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 2 cut(s) 344, 347
HpyAV CCTTC 3 cut(s) 207, 271, 280
HpyCH4V TGCA 2 cut(s) 251, 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
HspAI GCGC 1 cut(s) 207
Kpn2I TCCGGA 1 cut(s) 170
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 83, 114
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 9 cut(s) 20, 61, 184, 186, 201, 228, 240, 247, 249
Lsp1109I GCAGC 4 cut(s) 235, 242, 247, 263
LweI GCATC 3 cut(s) 88, 197, 304
MalI GATC 2 cut(s) 85, 116
MboI GATC 2 cut(s) 83, 114
MboII GAAGA 9 cut(s) 82, 85, 186, 286, 293, 305, 311, 317, 320
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 5 cut(s) 32, 64, 151, 178, 295
MroI TCCGGA 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 171, 234
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 2 cut(s) 83, 114
NgoMIV GCCGGC 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 94, 238
NmeAIII GCCGAG 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 5 cut(s) 16, 232, 250, 253, 262
PspN4I GGNNCC 2 cut(s) 94, 238
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 215, 257
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 5 cut(s) 15, 231, 249, 252, 261
Sau3AI GATC 2 cut(s) 83, 114
SetI ASST 4 cut(s) 9, 162, 256, 291
SfaNI GCATC 3 cut(s) 88, 197, 304
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 240
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 5 cut(s) 14, 230, 248, 251, 260
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.