Rw0G010450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00449
OG0000450
Physical Location & Seq
Forward (+)
14201 .. 14645
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010450.1

Sequence Viewer

Length: 291 bp
ATGGCAAAGCAAAGACTCAAAAGGGCATCAAGCTTCTCACGTCCTGAGTCATCTGGTCTCCCTTCAAACCAAAACCCTCACAACGGGTCATCGACTCACAACGAAACACAAGACATGGAAGAGATAGGTTCTGAAGCTCCACTATCAGAAGAACAAGTGTCTGGTCATTCTCCAAAAAAAGGTAGAGGGAAAGCCAAAGGTGAAAAAGGTTATGGAATGGATTCCGAAATCTTTCGAAAAAGGATCATAACATCTGAAGCAGCCAGAAGTATTTTCCCATTATTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.56

Weight (kDa)

9.45

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 153, 276
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 1 cut(s) 66
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 2 cut(s) 33, 137
AluI AGCT 2 cut(s) 33, 137
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 260
Asp700I GAANNNNTTC 2 cut(s) 220, 231
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 235
BbvI GCAGC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmgBI CACGTC 1 cut(s) 41
BmsI GCATC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 286
BssMI GATC 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 272
BtrI CACGTC 1 cut(s) 41
CviAII CATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 33, 137, 194, 263
CviKI_1 RGCY 4 cut(s) 33, 137, 194, 263
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 62
Eco57I CTGAAG 2 cut(s) 153, 276
FaeI CATG 1 cut(s) 118
FaiI YATR 3 cut(s) 116, 213, 248
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 4 cut(s) 15, 47, 94, 221
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 4 cut(s) 133, 148, 226, 256
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 4 cut(s) 39, 57, 147, 277
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 35
MaeII ACGT 1 cut(s) 40
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 131, 161
MlyI GAGTC 3 cut(s) 9, 56, 88
MnlI CCTC 2 cut(s) 87, 179
MroXI GAANNNNTTC 2 cut(s) 220, 231
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 118
NspV TTCGAA 1 cut(s) 235
PdmI GAANNNNTTC 2 cut(s) 220, 231
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 3 cut(s) 9, 55, 88
PpsI GAGTC 3 cut(s) 9, 55, 88
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 3 cut(s) 9, 56, 88
SetI ASST 7 cut(s) 35, 43, 130, 139, 184, 202, 211
SfaNI GCATC 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 235
TaiI ACGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 92, 235
TfiI GAWTC 1 cut(s) 221
TseI GCWGC 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 220, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.