Rroxscaffold_5G00350060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000450
Physical Location & Seq
Forward (+)
23599532 .. 23601886
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350060.1

Sequence Viewer

Length: 675 bp
ATGACGAAAATACCCCTCCCCGTCAACGACGAGCTCGTACGCTCGTTTACCGAGATCGCATCGCCGACACTCGGGAAAGTACAAAGCTTTGTCTGCTTTGTCTTGGCTATGCGGAGGTCCGAGCTGCTCGTTGGGTTGGGCTGGGCTGTTGGCCGTGTGGAACGACAACTAGAAGTATTTTCCCATTATTCCAGCGAGAGCTTAAAGGACCATATATTACATGGAGTGAATACCCGAAAGATCAGTTGGGTTTATTATTTGAACATTGGAAGAATTTTGGTTTCAAGCTCAATTGCCCTGGAGGAAGACGTGAAAGAAGCATTTGCAGCCTATATCAAAAAGAATTATAATAGTTGGATGTGGGAGATAAGGAATAGTGTTTTCAAAAAATACAAGAGTCCCGCAGCTAGAGATGCTCATCACCCATCATTTTTGCTTCCACATATATGGACAGGAATGGTTGAAAAATGGCTAAAACCAGATTGGCAAGGAAAGTCCGACATGGTGCATACAACCGGCTCAGTTCCAATGGCAAAATATATCAAAGAGGAGGAAACTATGCATACCGAAAAGAGGCTCGAAGAGGTATTTGGTGAAGAAAGTGAAGAAGTAGATGAATGGGGCATATATAAAGTCGTGATTGGGAGGGCCAAGTCACGGCAGAATTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.85

Weight (kDa)

7.84

Isoelectric Point (pI)

53.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AciI CCGC 2 cut(s) 112, 402
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 2 cut(s) 273, 664
AfaI GTAC 2 cut(s) 39, 81
AfiI CCNNNNNNNGG 3 cut(s) 71, 573, 657
AgsI TTSAA 4 cut(s) 262, 285, 385, 464
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 4 cut(s) 229, 261, 573, 605
AluBI AGCT 6 cut(s) 34, 87, 124, 201, 288, 407
AluI AGCT 6 cut(s) 34, 87, 124, 201, 288, 407
Alw21I GWGCWC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 151, 648
ApeKI GCWGC 3 cut(s) 124, 326, 404
ApoI RAATTY 2 cut(s) 273, 664
AspS9I GGNCC 3 cut(s) 117, 208, 648
AsuHPI GGTGA 2 cut(s) 413, 605
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 117, 208
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 111, 338, 416
BccI CCATC 1 cut(s) 433
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 299
BfaI CTAG 2 cut(s) 170, 408
BisI GCNGC 3 cut(s) 125, 327, 405
BlsI GCNGC 3 cut(s) 126, 328, 406
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 2 cut(s) 117, 208
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 117, 208, 648
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 68, 403
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 573, 657
Bse118I RCCGGY 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 363
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 71, 573, 657
BseMII CTCAG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 3 cut(s) 111, 338, 416
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 153, 650
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 516
BsiWI CGTACG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 71, 573, 657
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 153, 650
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 54, 240
BspACI CCGC 2 cut(s) 112, 402
BspANI GGCC 2 cut(s) 153, 650
BspCNI CTCAG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 54, 240
Bst2UI CCWGG 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 576
BstDEI CTNAG 2 cut(s) 520, 672
BstF5I GGATG 1 cut(s) 363
BstKTI GATC 2 cut(s) 57, 243
BstMBI GATC 2 cut(s) 54, 240
BstMWI GCNNNNNNNGC 3 cut(s) 93, 326, 413
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 111, 338, 416
BstV2I GAAGAC 1 cut(s) 312
BstXI CCANNNNNNTGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 153, 650
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 3 cut(s) 117, 208, 648
Csp6I GTAC 2 cut(s) 38, 80
CviAII CATG 2 cut(s) 221, 502
CviQI GTAC 2 cut(s) 38, 80
DdeI CTNAG 2 cut(s) 520, 672
DpnI GATC 2 cut(s) 56, 242
DpnII GATC 2 cut(s) 54, 240
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 117, 208
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 2 cut(s) 224, 505
FaqI GGGAC 1 cut(s) 384
FatI CATG 2 cut(s) 220, 501
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 125, 327, 405
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 125, 327, 405
FspBI CTAG 2 cut(s) 170, 408
GluI GCNGC 3 cut(s) 125, 327, 405
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 153, 650
HapII CCGG 1 cut(s) 516
Hin1II CATG 2 cut(s) 224, 505
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 1 cut(s) 397
HpaII CCGG 1 cut(s) 516
HphI GGTGA 2 cut(s) 413, 605
Hpy166II GTNNAC 2 cut(s) 25, 48
Hpy188I TCNGA 2 cut(s) 121, 499
Hpy188III TCNNGA 2 cut(s) 73, 637
Hpy8I GTNNAC 2 cut(s) 25, 48
Hpy99I CGWCG 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 326, 508, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 326, 413
HpyF3I CTNAG 2 cut(s) 520, 672
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 2 cut(s) 224, 505
Kzo9I GATC 2 cut(s) 54, 240
LpnPI CCDG 7 cut(s) 127, 205, 284, 311, 438, 492, 529
Lsp1109I GCAGC 3 cut(s) 111, 338, 416
LweI GCATC 2 cut(s) 68, 403
MaeI CTAG 2 cut(s) 170, 408
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 654
MalI GATC 2 cut(s) 56, 242
MboI GATC 2 cut(s) 54, 240
MboII GAAGA 5 cut(s) 282, 317, 593, 608, 617
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 4 cut(s) 273, 291, 343, 664
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 2 cut(s) 335, 522
MnlI CCTC 8 cut(s) 26, 108, 295, 541, 544, 567, 577, 639
Mph1103I ATGCAT 1 cut(s) 564
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 445
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 93, 326, 413
NdeII GATC 2 cut(s) 54, 240
NlaIII CATG 2 cut(s) 224, 505
NmuCI GTSAC 1 cut(s) 654
NsiI ATGCAT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 33
Pfl23II CGTACG 1 cut(s) 37
PkrI GCNGC 3 cut(s) 126, 328, 406
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PsiI TTATAA 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 297
PspLI CGTACG 1 cut(s) 37
PspPI GGNCC 3 cut(s) 117, 208, 648
RsaI GTAC 2 cut(s) 39, 81
RsaNI GTAC 2 cut(s) 38, 80
RseI CAYNNNNRTG 1 cut(s) 445
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 125, 327, 405
Sau3AI GATC 2 cut(s) 54, 240
Sau96I GGNCC 3 cut(s) 117, 208, 648
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 36
SetI ASST 9 cut(s) 36, 89, 119, 126, 203, 290, 312, 409, 588
SfaNI GCATC 2 cut(s) 68, 403
SinI GGWCC 2 cut(s) 117, 208
SmiMI CAYNNNNRTG 1 cut(s) 445
Sse9I AATT 4 cut(s) 273, 291, 343, 664
SsiI CCGC 2 cut(s) 112, 402
SspMI CTAG 2 cut(s) 170, 408
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 579
TasI AATT 4 cut(s) 273, 291, 343, 664
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseFI GTSAC 1 cut(s) 654
TseI GCWGC 3 cut(s) 124, 326, 404
Tsp45I GTSAC 1 cut(s) 654
TspDTI ATGAA 1 cut(s) 630
VpaK11BI GGWCC 2 cut(s) 117, 208
XapI RAATTY 2 cut(s) 273, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 218
XspI CTAG 2 cut(s) 170, 408
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.