Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000450

Physical Location & Seq

Genomic Coordinates Forward (+)

40622853 .. 40623583

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAGGAAGATTGAGCAGCACGGCGTTTGAAATCATGGGCGGAAACGGGGTCATCCATTGTTCCGTCGCCTTCTCTCTCCGGCTCTGTGCTAGCATAGGCTTCCCCGTCGACAAACCTTCAGTCCCCGACATACCCCTCCCCGTCAACGACGAGCTCGCATGCCTGGAAACTCCCACGACTCTTCCAATTATCCACCAATTTTGTGAATCAATCCTTATTGCGTTTAGAGGAAAAAAACTGAAGAAGAACACTGCAGTTATGGCAAAGCAAACACTCAAAAGGGCATCAAGCTTCTCACGTCCTGAGTCATCTGATCTCCGTTCAAACCAAAACCCTCACAACGGGTCATCGACTCACAACAAAACACAAGACATGGAAGAGATAGGTTCTGAAGCTCCACTATCAGAAGAACAAGGTATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.34

Weight (kDa)

6.41

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica	Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata	RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora	Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii	Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa	Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha	Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana	Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	3 cut(s)	105, 263, 414
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	32, 327
AjiI	CACGTC	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	157, 294, 398
AluI	AGCT	3 cut(s)	157, 294, 398
Alw21I	GWGCWC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	18
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AsuNHI	GCTAGC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	296
BmtI	GCTAGC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	298
BspMAI	CTGCAG	1 cut(s)	259
BspOI	GCTAGC	1 cut(s)	96
BssMI	GATC	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	189, 375
BstC8I	GCNNGC	3 cut(s)	94, 159, 163
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	30
BtrI	CACGTC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	94, 159, 163
CspCI	CAANNNNNGTGG	2 cut(s)	185, 220
CviAII	CATG	3 cut(s)	37, 162, 376
CviJI	RGCY	5 cut(s)	85, 102, 157, 294, 398
CviKI_1	RGCY	5 cut(s)	85, 102, 157, 294, 398
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	189, 375
EarI	CTCTTC	2 cut(s)	189, 375
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	3 cut(s)	105, 263, 414
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	3 cut(s)	40, 165, 379
FaiI	YATR	7 cut(s)	38, 98, 134, 163, 263, 377, 422
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	36, 161, 375
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	19
HapII	CCGG	1 cut(s)	82
Hin1II	CATG	3 cut(s)	40, 165, 379
HincII	GTYRAC	2 cut(s)	112, 148
HindII	GTYRAC	2 cut(s)	112, 148
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	4 cut(s)	181, 209, 308, 355
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	112, 148
Hpy188I	TCNGA	3 cut(s)	316, 394, 409
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	2 cut(s)	112, 148
Hpy99I	CGWCG	3 cut(s)	71, 113, 155
HpyAV	CCTTC	2 cut(s)	82, 129
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	40, 165, 379
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	403
LpnPI	CCDG	4 cut(s)	95, 152, 179, 318
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	301
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	6 cut(s)	21, 176, 256, 259, 392, 422
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	189, 200
MlyI	GAGTC	3 cut(s)	175, 317, 349
MnlI	CCTC	3 cut(s)	149, 224, 348
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	40, 165, 379
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	3 cut(s)	175, 316, 349
PpsI	GAGTC	3 cut(s)	175, 316, 349
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	1 cut(s)	316
SchI	GAGTC	3 cut(s)	175, 317, 349
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	7 cut(s)	121, 159, 296, 304, 391, 400, 421
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	2 cut(s)	189, 200
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	2 cut(s)	111, 353
TasI	AATT	2 cut(s)	189, 200
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	1 cut(s)	259
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	2 cut(s)	55, 311
TspRI	CASTG	1 cut(s)	259
XceI	RCATGY	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.