RchiOBHm_Chr3g0471341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000450
Physical Location & Seq
Reverse (-)
17211290 .. 17213027
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43708

Sequence Viewer

Length: 225 bp
ATGCATACTCAAAACAGGATTGAAGAGGCATTCGGTGAAGAAGGTGAAGAAGTAGATGAATGGGGCATATATAAAGCTGTGATTGGAGGGCCGAGTCACGGCAGAATTCGTGGCTTAGGTGATGGCATGATACCACCTGAAGATGAAGAGAATATGTGGACTCTTCTAGCCACACTTGCAATAAGCGTACGTGCTTGGCGCGTGAGAAAGAATTTGAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.38

Weight (kDa)

5.07

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AcsI RAATTY 2 cut(s) 105, 211
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 23, 217
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 105, 211
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 47, 56, 131
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 115
BfaI CTAG 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 115
BsaAI YACGTR 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 91
BsiWI CGTACG 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 98
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 91
BspANI GGCC 1 cut(s) 91
BspFNI CGCG 1 cut(s) 201
Bst6I CTCTTC 3 cut(s) 18, 141, 168
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstUI CGCG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 91
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 77, 91, 114, 170
CviKI_1 RGCY 4 cut(s) 77, 91, 114, 170
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 115
Eam1104I CTCTTC 3 cut(s) 18, 141, 168
EarI CTCTTC 3 cut(s) 18, 141, 168
Eco57I CTGAAG 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 130
FaiI YATR 6 cut(s) 6, 68, 70, 72, 128, 155
FatI CATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 91
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 2 cut(s) 94, 160
HphI GGTGA 3 cut(s) 47, 56, 131
Hpy166II GTNNAC 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 4, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 199
LpnPI CCDG 1 cut(s) 150
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 6 cut(s) 35, 50, 59, 152, 155, 158
MluCI AATT 2 cut(s) 105, 211
MlyI GAGTC 2 cut(s) 103, 154
MnlI CCTC 2 cut(s) 19, 80
Mph1103I ATGCAT 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 130
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 29
Pfl23II CGTACG 1 cut(s) 187
PleI GAGTC 2 cut(s) 102, 154
PpsI GAGTC 2 cut(s) 102, 154
Ppu21I YACGTR 1 cut(s) 191
PspLI CGTACG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 103, 154
SetI ASST 5 cut(s) 46, 79, 121, 139, 193
Sse9I AATT 2 cut(s) 105, 211
SspMI CTAG 1 cut(s) 167
TaiI ACGT 1 cut(s) 193
TasI AATT 2 cut(s) 105, 211
TseFI GTSAC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 72, 159
XapI RAATTY 2 cut(s) 105, 211
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.