Rmu_sc0002194.1_g000008

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002194.1
OG0000450
Physical Location & Seq
Reverse (-)
29079 .. 31970
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002194.1_g000008.1.cds

Sequence Viewer

Length: 1005 bp
atgtctcgtgatgaggcaaaagaaacacaaaacaatggagttatggtgaaaggagagaaccaaattgagggcgaagtgccttggtatggaacaataaaagacattgttgagttgcggtatacaaagaggaatagggttgtcttgttcaattgtaattggtatgacacggccacagaacagactggtgataaggtggatcggtatgggatagtaagtgttaatacacgagccaagctgaatactgatgaaccatttgtgctagctgaccatgcaactcaagtttattacattcaggaaatcaaaaatagtgcatggagtgttgtggtggaaacaaaacctagaaacgtttttgagatgcctacaaatgaaggagaaccatctcaagaagaagaagctcagcatgtcattgcaaagaaaccaaagagtcgccaaagaccattaagcacagatagtattacaccttctaatgacagtgaagagcaagaaactgaagagacagggtctgagtctcaaccttcaaatgcaacaggttcaggtccccctaagaagaaaggtagagggggagctaagggtgaaaagggacatggcatgcgagctaatatacatgacggaaggatcataacccctcaagcaacacgtgcaatattcccactcttcaagcaagagctgacggagccatttacaacatggcctcaatacaaaaagcaaggaaagaacttgaaaagggtgtttgaacgttggcaagaatgtaacttcaaattcacatgctctgaagaagatgatgatcttactgaaagaaagaatagagtggaagaagtgtttggtgaagctgatgattgggaaatatatcagaaagtgattggtgggcctagtcacggtcgtgtacttggtttaggtgctggggacaatattgcaacagattcaagtgcacaccatgatgaagatggtactgatgaagatggtgatgaagatgttgttgatgaatatgatgcaaactctaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

334

Amino Acids

37.65

Weight (kDa)

4.84

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 119
AciI CCGC 1 cut(s) 115
AclI AACGTT 2 cut(s) 345, 736
AclWI GGATC 2 cut(s) 204, 623
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 758
AcuI CTGAAG 2 cut(s) 510, 792
AcvI CACGTG 1 cut(s) 638
AfaI GTAC 2 cut(s) 885, 949
AfiI CCNNNNNNNGG 3 cut(s) 67, 86, 875
AflIII ACRYGT 1 cut(s) 635
AgsI TTSAA 7 cut(s) 148, 519, 658, 721, 734, 757, 924
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AleI CACNNNNGTG 1 cut(s) 879
AluBI AGCT 7 cut(s) 235, 263, 395, 566, 596, 667, 830
AluI AGCT 7 cut(s) 235, 263, 395, 566, 596, 667, 830
Alw21I GWGCWC 1 cut(s) 931
Alw26I GTCTC 3 cut(s) 9, 488, 513
Alw44I GTGCAC 1 cut(s) 927
AlwI GGATC 2 cut(s) 204, 623
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 3 cut(s) 168, 689, 866
ApaLI GTGCAC 1 cut(s) 927
ApoI RAATTY 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 536, 866
AsuHPI GGTGA 5 cut(s) 58, 197, 584, 836, 974
AsuNHI GCTAGC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 931
BarI GAAGNNNNNNTAC 2 cut(s) 445, 477
BauI CACGAG 2 cut(s) 6, 225
BbrPI CACGTG 1 cut(s) 638
Bbv12I GWGCWC 1 cut(s) 931
BccI CCATC 3 cut(s) 385, 938, 953
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 9, 488, 513
BfaI CTAG 3 cut(s) 260, 339, 870
BlpI GCTNAGC 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 2 cut(s) 536, 866
BmiI GGNNCC 2 cut(s) 538, 675
BmsI GCATC 2 cut(s) 345, 979
BmtI GCTAGC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 396
BpuEI CTTGAG 3 cut(s) 261, 366, 612
BsaAI YACGTR 1 cut(s) 638
BsaBI GATNNNNATC 1 cut(s) 783
BsaJI CCNNGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 86, 875
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 783
BseDI CCNNGG 1 cut(s) 80
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 3 cut(s) 67, 86, 875
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 410, 495
BseNI ACTGG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 931
BseYI CCCAGC 1 cut(s) 899
Bsh1285I CGRYCG 1 cut(s) 880
BshFI GGCC 3 cut(s) 170, 691, 868
BsiEI CGRYCG 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 931
BslFI GGGAC 3 cut(s) 522, 594, 917
BslI CCNNNNNNNGG 3 cut(s) 67, 86, 875
BsmAI GTCTC 3 cut(s) 9, 488, 513
BsmFI GGGAC 3 cut(s) 522, 594, 917
BsnI GGCC 3 cut(s) 170, 691, 868
Bsp1286I GDGCHC 1 cut(s) 931
Bsp143I GATC 3 cut(s) 196, 615, 784
Bsp1720I GCTNAGC 1 cut(s) 396
BspACI CCGC 1 cut(s) 115
BspANI GGCC 3 cut(s) 170, 691, 868
BspCNI CTCAG 2 cut(s) 409, 496
BspLI GGNNCC 2 cut(s) 538, 675
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 204, 623
BspQI GCTCTTC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 196, 615, 784
BssNAI GTATAC 1 cut(s) 120
BssSI CACGAG 2 cut(s) 6, 225
BssT1I CCWWGG 1 cut(s) 80
Bst1107I GTATAC 1 cut(s) 120
Bst2BI CACGAG 2 cut(s) 6, 225
Bst4CI ACNGT 2 cut(s) 473, 878
Bst6I CTCTTC 3 cut(s) 471, 486, 659
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 3 cut(s) 261, 590, 594
BstDEI CTNAG 4 cut(s) 396, 504, 543, 567
BstKTI GATC 3 cut(s) 199, 618, 787
BstMAI GTCTC 3 cut(s) 9, 488, 513
BstMBI GATC 3 cut(s) 196, 615, 784
BstMCI CGRYCG 1 cut(s) 880
BstMWI GCNNNNNNNGC 3 cut(s) 269, 638, 673
BstNSI RCATGY 3 cut(s) 404, 592, 768
BstSLI GKGCMC 1 cut(s) 931
BstZ17I GTATAC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 170, 691, 868
BtsIMutI CAGTG 1 cut(s) 478
Cac8I GCNNGC 3 cut(s) 261, 590, 594
CaiI CAGNNNCTG 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 536, 866
Csp6I GTAC 2 cut(s) 884, 948
CviAII CATG 9 cut(s) 269, 312, 401, 584, 589, 605, 687, 765, 935
CviQI GTAC 2 cut(s) 884, 948
DdeI CTNAG 4 cut(s) 396, 504, 543, 567
DpnI GATC 3 cut(s) 198, 617, 786
DpnII GATC 3 cut(s) 196, 615, 784
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 3 cut(s) 471, 486, 659
EarI CTCTTC 3 cut(s) 471, 486, 659
Eco130I CCWWGG 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 510, 792
Eco72I CACGTG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 9 cut(s) 272, 315, 404, 587, 592, 608, 690, 768, 938
FaqI GGGAC 3 cut(s) 522, 594, 917
FatI CATG 9 cut(s) 268, 311, 400, 583, 588, 604, 686, 764, 934
FblI GTMKAC 1 cut(s) 119
FspBI CTAG 3 cut(s) 260, 339, 870
GsaI CCCAGC 1 cut(s) 903
HaeIII GGCC 3 cut(s) 170, 691, 868
Hin1II CATG 9 cut(s) 272, 315, 404, 587, 592, 608, 690, 768, 938
HinfI GANTC 3 cut(s) 424, 506, 920
HphI GGTGA 5 cut(s) 58, 197, 584, 836, 974
Hpy166II GTNNAC 3 cut(s) 120, 884, 929
Hpy188I TCNGA 3 cut(s) 505, 772, 852
Hpy188III TCNNGA 3 cut(s) 8, 293, 383
Hpy8I GTNNAC 3 cut(s) 120, 884, 929
HpyAV CCTTC 4 cut(s) 362, 471, 525, 606
HpyCH4III ACNGT 2 cut(s) 473, 878
HpyCH4IV ACGT 3 cut(s) 345, 637, 736
HpyCH4V TGCA 8 cut(s) 272, 311, 410, 524, 641, 914, 929, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 638, 673
HpyF3I CTNAG 4 cut(s) 396, 504, 543, 567
HpySE526I ACGT 3 cut(s) 345, 637, 736
Hsp92II CATG 9 cut(s) 272, 315, 404, 587, 592, 608, 690, 768, 938
Kzo9I GATC 3 cut(s) 196, 615, 784
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 2 cut(s) 563, 673
LpnPI CCDG 6 cut(s) 168, 278, 483, 513, 519, 885
LweI GCATC 2 cut(s) 345, 979
MaeI CTAG 3 cut(s) 260, 339, 870
MaeII ACGT 3 cut(s) 345, 637, 736
MaeIII GTNAC 2 cut(s) 749, 872
MalI GATC 3 cut(s) 198, 617, 786
MboI GATC 3 cut(s) 196, 615, 784
MfeI CAATTG 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 931
MluCI AATT 5 cut(s) 63, 148, 154, 758, 1000
MlyI GAGTC 2 cut(s) 433, 515
MnlI CCTC 6 cut(s) 7, 61, 120, 551, 636, 702
MseI TTAA 3 cut(s) 219, 440, 1003
MslI CAYNNNNRTG 2 cut(s) 879, 936
MunI CAATTG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 269, 638, 673
NdeII GATC 3 cut(s) 196, 615, 784
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 9 cut(s) 272, 315, 404, 587, 592, 608, 690, 768, 938
NlaIV GGNNCC 2 cut(s) 538, 675
NmuCI GTSAC 1 cut(s) 872
NspI RCATGY 3 cut(s) 404, 592, 768
OliI CACNNNNGTG 1 cut(s) 879
PaeI GCATGC 1 cut(s) 592
PciSI GCTCTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 920
PflFI GACNNNGTC 1 cut(s) 499
PleI GAGTC 2 cut(s) 432, 514
PmaCI CACGTG 1 cut(s) 638
PmlI CACGTG 1 cut(s) 638
PpsI GAGTC 2 cut(s) 432, 514
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 536
Psp1406I AACGTT 2 cut(s) 345, 736
Psp5II RGGWCCY 1 cut(s) 536
PspCI CACGTG 1 cut(s) 638
PspFI CCCAGC 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 538, 675
PspPI GGNCC 2 cut(s) 536, 866
PspPPI RGGWCCY 1 cut(s) 536
PstNI CAGNNNCTG 1 cut(s) 503
PsyI GACNNNGTC 1 cut(s) 499
RsaI GTAC 2 cut(s) 885, 949
RsaNI GTAC 2 cut(s) 884, 948
RseI CAYNNNNRTG 2 cut(s) 879, 936
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 219, 440, 1003
Sau3AI GATC 3 cut(s) 196, 615, 784
Sau96I GGNCC 2 cut(s) 536, 866
SchI GAGTC 2 cut(s) 433, 515
SduI GDGCHC 1 cut(s) 931
SfaNI GCATC 2 cut(s) 345, 979
SinI GGWCC 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 879, 936
SmlI CTYRAG 3 cut(s) 276, 381, 627
SmoI CTYRAG 3 cut(s) 276, 381, 627
SphI GCATGC 1 cut(s) 592
Sse9I AATT 5 cut(s) 63, 148, 154, 758, 1000
SsiI CCGC 1 cut(s) 115
SspI AATATT 2 cut(s) 645, 910
SspMI CTAG 3 cut(s) 260, 339, 870
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 473, 878
TaiI ACGT 3 cut(s) 348, 640, 739
TasI AATT 5 cut(s) 63, 148, 154, 758, 1000
TatI WGTACW 1 cut(s) 883
TfiI GAWTC 1 cut(s) 920
Tru1I TTAA 3 cut(s) 219, 440, 1003
Tru9I TTAA 3 cut(s) 219, 440, 1003
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 872
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 6 cut(s) 261, 381, 954, 969, 981, 996
TspGWI ACGGA 2 cut(s) 624, 686
TspRI CASTG 1 cut(s) 478
Tth111I GACNNNGTC 1 cut(s) 499
VneI GTGCAC 1 cut(s) 927
VpaK11BI GGWCC 1 cut(s) 536
XapI RAATTY 1 cut(s) 758
XceI RCATGY 3 cut(s) 404, 592, 768
XcmI CCANNNNNNNNNTGG 2 cut(s) 684, 941
XmiI GTMKAC 1 cut(s) 119
XspI CTAG 3 cut(s) 260, 339, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.