Rh3CG355700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000450
Physical Location & Seq
Reverse (-)
43545755 .. 43556415
10661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG355700.1

Sequence Viewer

Length: 315 bp
ATGTTCACAGAACACATCAAGAATCGTTATAGTGATTGGATGAGTGAAATCAAGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCAAACAACCCATCATATTTGAAGCCGGAGATATGGACACCAATGGTTGATGAATGGCTAAAGGAAAAGTGGCAGGACAAGAGTGAGCGGAACGCGATTAATCGTGACAAATCAACTATGGTGCATACAACGGGTTCAATTCCGATGGCGAAATACATAAAAGAGGAGGATAAAACTTCAGGCTTCCGAGGGGCTTCATCTGCTCAGGTACATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

104

Amino Acids

12.19

Weight (kDa)

9.52

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 41 - 92 3.2e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 67, 184
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 1 cut(s) 306
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 2 cut(s) 118, 234
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 83, 86
AseI ATTAAT 1 cut(s) 195
BbvI GCAGC 2 cut(s) 70, 98
BccI CCATC 2 cut(s) 115, 235
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
Bpu10I CCTNAGC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 70, 98
Bsh1236I CGCG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 122
BspACI CCGC 2 cut(s) 67, 184
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 95, 296
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 70, 98
BtsCI GGATG 1 cut(s) 45
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 308
CviJI RGCY 5 cut(s) 89, 121, 154, 279, 290
CviKI_1 RGCY 5 cut(s) 89, 121, 154, 279, 290
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 258
FaeI CATG 1 cut(s) 311
FaiI YATR 8 cut(s) 30, 96, 112, 130, 215, 222, 254, 309
FatI CATG 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 84, 87
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 2 cut(s) 84, 87
GluI GCNGC 2 cut(s) 84, 87
HapII CCGG 1 cut(s) 122
Hin1II CATG 1 cut(s) 311
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 240, 284
Hpy188III TCNNGA 3 cut(s) 19, 52, 200
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 86, 98, 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 296
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 311
LpnPI CCDG 4 cut(s) 135, 155, 261, 287
Lsp1109I GCAGC 2 cut(s) 70, 98
MaeIII GTNAC 1 cut(s) 200
MbiI CCGCTC 1 cut(s) 184
MluCI AATT 1 cut(s) 234
MnlI CCTC 3 cut(s) 253, 256, 278
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 95, 296
NlaIII CATG 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 85, 88
PscI ACATGT 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 195
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 84, 87
SetI ASST 2 cut(s) 91, 306
SfcI CTRYAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 234
SsiI CCGC 2 cut(s) 67, 184
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 234
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 83, 86
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 162, 282
VspI ATTAAT 1 cut(s) 195
XceI RCATGY 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.