Rroxscaffold_4G00312920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000450
Physical Location & Seq
Forward (+)
36107822 .. 36109048
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312920.1

Sequence Viewer

Length: 348 bp
ATGGCGTTGCGATGGCTTAGGGATCCGGTGCGGCGGCGTGGTGCTGCAAGGCGGCGGTGTGGTGATGAGGGAGTTCGCCGGCGGTGGGAGTGGTTGCTGCGGCGCGTGTTCTTTGCTGTGGGGAGTGGTGTTTGGATTGGGCCTCTGTTCCCGGGCCCTGCTGGTGTTTTTATGCTTCAAGTTGTATTTATCAGCAGCATAAATTTAGGTGTTGGGGTGAAACTAAAAGATTACACTTCACCTAACCAAACTTGTAATAAGCCTACATGTTTGGAACAAAAAGAAGATTATGAAAGAGTGAAAGGCCAAGTTGAATCTCCGATATTGAGTGCCTCCATTGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.09

Weight (kDa)

10.13

Isoelectric Point (pI)

83.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 6 cut(s) 31, 34, 52, 55, 82, 100
AclWI GGATC 2 cut(s) 17, 30
AcsI RAATTY 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 179, 314
AlwI GGATC 2 cut(s) 17, 30
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 3 cut(s) 140, 154, 304
ApaI GGGCCC 1 cut(s) 158
ApeKI GCWGC 3 cut(s) 44, 97, 195
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 140, 154, 155
AsuC2I CCSGG 2 cut(s) 152, 153
AsuHPI GGTGA 3 cut(s) 74, 229, 231
AvaI CYCGRG 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 31, 84, 207
BccI CCATC 1 cut(s) 6
BcnI CCSGG 2 cut(s) 152, 153
BfaI CTAG 1 cut(s) 346
BisI GCNGC 7 cut(s) 32, 35, 45, 53, 98, 101, 196
BlsI GCNGC 7 cut(s) 33, 36, 46, 54, 99, 102, 197
Bme1390I CCNGG 2 cut(s) 152, 153
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 140, 154, 155
BmiI GGNNCC 2 cut(s) 24, 156
BmrFI CCNGG 2 cut(s) 152, 153
Bpu10I CCTNAGC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 152, 153
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 3 cut(s) 31, 84, 207
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 142, 156, 306
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 3 cut(s) 26, 79, 152
BslI CCNNNNNNNGG 1 cut(s) 85
BsnI GGCC 3 cut(s) 142, 156, 306
BsoBI CYCGRG 1 cut(s) 151
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 6 cut(s) 31, 34, 52, 55, 82, 100
BspANI GGCC 3 cut(s) 142, 156, 306
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 24, 156
BspPI GGATC 2 cut(s) 17, 30
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 150, 151
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 31, 84, 207
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 3 cut(s) 142, 156, 306
BtgZI GCGATG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 140, 154, 155
Cfr9I CCCGGG 1 cut(s) 151
CviAII CATG 1 cut(s) 267
CviJI RGCY 5 cut(s) 16, 142, 156, 262, 306
CviKI_1 RGCY 5 cut(s) 16, 142, 156, 262, 306
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 1 cut(s) 270
FaiI YATR 4 cut(s) 173, 200, 268, 291
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 7 cut(s) 32, 35, 45, 53, 98, 101, 196
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 7 cut(s) 32, 35, 45, 53, 98, 101, 196
FspBI CTAG 1 cut(s) 346
GlaI GCGC 1 cut(s) 104
GluI GCNGC 7 cut(s) 32, 35, 45, 53, 98, 101, 196
HaeIII GGCC 3 cut(s) 142, 156, 306
HapII CCGG 3 cut(s) 26, 79, 152
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 270
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 314
HpaII CCGG 3 cut(s) 26, 79, 152
HphI GGTGA 3 cut(s) 74, 229, 231
Hpy188I TCNGA 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 47
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 270
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 5 cut(s) 39, 92, 147, 165, 171
Lsp1109I GCAGC 3 cut(s) 31, 84, 207
MaeI CTAG 1 cut(s) 346
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 296
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 202
MnlI CCTC 3 cut(s) 61, 153, 343
MreI CGCCGGCG 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 78
MspI CCGG 3 cut(s) 26, 79, 152
MspR9I CCNGG 2 cut(s) 152, 153
MvnI CGCG 1 cut(s) 105
NaeI GCCGGC 1 cut(s) 80
NciI CCSGG 2 cut(s) 152, 153
NdeII GATC 1 cut(s) 22
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 2 cut(s) 24, 156
NspI RCATGY 1 cut(s) 270
PciI ACATGT 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 7 cut(s) 33, 36, 46, 54, 99, 102, 197
PscI ACATGT 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 24, 156
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 3 cut(s) 140, 154, 155
PsuI RGATCY 1 cut(s) 22
SatI GCNGC 7 cut(s) 32, 35, 45, 53, 98, 101, 196
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 3 cut(s) 140, 154, 155
ScrFI CCNGG 2 cut(s) 152, 153
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 211, 244
SgrAI CRCCGGYG 1 cut(s) 78
SmaI CCCGGG 1 cut(s) 153
Sse9I AATT 1 cut(s) 202
SsiI CCGC 6 cut(s) 31, 34, 52, 55, 82, 100
SspMI CTAG 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 150, 151
TasI AATT 1 cut(s) 202
TauI GCSGC 4 cut(s) 34, 37, 55, 103
TfiI GAWTC 1 cut(s) 314
TseI GCWGC 3 cut(s) 44, 97, 195
TspDTI ATGAA 1 cut(s) 306
TspMI CCCGGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 270
XmaI CCCGGG 1 cut(s) 151
XspI CTAG 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.