RchiOBHm_Chr2g0159341

Domain of unknown function (DUF4218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000450
Physical Location & Seq
Reverse (-)
75442763 .. 75443785
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52791

Sequence Viewer

Length: 639 bp
ATGAAAATGCTTTTATGTGCTAAAGTATTGAGGGCAGAGGATTTGGAACTTCTTGAGAAAAGTGTGTTCATAACTCTTTGCAAGTTGGAAAAAGTATTCCCACCAGCATTTAAGTTCCATGTAAGTAAAGCAATAGAGTGTTGGAGGAAGTTCCATGTAAGTAAAGCAAAGGAAGGAAAAGAAGAACATTGGAAAAGTGACAAGGCTAAGGAAATTTATGATGATCTTACTGAAAGAAAGAATAGAGTGGAAGAAGTGTTTGGTGAAGCTGATGATTGGGAAATATATCAGAAAGTGATTGGTGGGCCTAGTCACGGTCGTGTACTTGGTTTAGGTGCTGGGGTGAAACTAAAAGATTACAATTCACCTAACCAAACTTGTAATAAGCCTACATGTTTGGAACAAAAAGAAGATTATGAAAGAGTGAAAGGCCAAGTTGAATCTCTGACAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTGCCTAATACCTCAGACAATTCTAAAGCAAGAAACTCACATTCTGTGGACAATATTGCAACAGATTCAAGTGCACACCATGATGAAGATGGTACTGATGAAGATGGTGATAAAGATGTTGCTGATGAATATGATGCAAACTCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4218

Protein Analysis

212

Amino Acids

23.99

Weight (kDa)

5.25

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 5 - 38 3.1e-07 Domain of unknown function (DUF4218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 213
AfaI GTAC 2 cut(s) 324, 583
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 392
AgsI TTSAA 3 cut(s) 440, 482, 558
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 565
Alw44I GTGCAC 1 cut(s) 561
AoxI GGCC 2 cut(s) 305, 430
ApaLI GTGCAC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 275, 355, 357, 608
BaeGI GKGCMC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 477
BccI CCATC 2 cut(s) 572, 587
BfaI CTAG 2 cut(s) 309, 633
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 305
BmsI GCATC 1 cut(s) 613
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 307, 432
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 565
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 2 cut(s) 307, 432
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 2 cut(s) 307, 432
BspCNI CTCAG 1 cut(s) 515
BssMI GATC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 207, 502
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 1 cut(s) 477
BsuRI GGCC 2 cut(s) 307, 432
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 2 cut(s) 323, 582
CviAII CATG 4 cut(s) 119, 155, 393, 569
CviJI RGCY 5 cut(s) 206, 269, 307, 388, 432
CviKI_1 RGCY 5 cut(s) 206, 269, 307, 388, 432
CviQI GTAC 2 cut(s) 323, 582
DdeI CTNAG 2 cut(s) 207, 502
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
FaeI CATG 4 cut(s) 122, 158, 396, 572
FatI CATG 4 cut(s) 118, 154, 392, 568
Fnu4HI GCNGC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 491
FspBI CTAG 2 cut(s) 309, 633
GluI GCNGC 1 cut(s) 491
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 307, 432
Hin1II CATG 4 cut(s) 122, 158, 396, 572
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 3 cut(s) 440, 469, 554
HphI GGTGA 4 cut(s) 275, 355, 357, 608
Hpy166II GTNNAC 4 cut(s) 323, 468, 538, 563
Hpy188I TCNGA 3 cut(s) 291, 447, 505
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 4 cut(s) 323, 468, 538, 563
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 4 cut(s) 81, 548, 563, 626
HpyF3I CTNAG 2 cut(s) 207, 502
Hsp92II CATG 4 cut(s) 122, 158, 396, 572
Kzo9I GATC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 117, 324
Lsp1109I GCAGC 1 cut(s) 477
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 309, 633
MaeIII GTNAC 2 cut(s) 197, 311
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 5 cut(s) 194, 263, 422, 587, 602
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 5 cut(s) 213, 361, 455, 474, 508
MlyI GAGTC 1 cut(s) 463
MmeI TCCRAC 2 cut(s) 66, 122
MnlI CCTC 4 cut(s) 24, 31, 138, 511
MseI TTAA 2 cut(s) 111, 637
MslI CAYNNNNRTG 2 cut(s) 318, 570
NdeII GATC 1 cut(s) 223
NlaIII CATG 4 cut(s) 122, 158, 396, 572
NmuCI GTSAC 2 cut(s) 197, 311
NspI RCATGY 1 cut(s) 396
OliI CACNNNNGTG 1 cut(s) 318
PciI ACATGT 1 cut(s) 392
PfeI GAWTC 2 cut(s) 440, 554
PkrI GCNGC 1 cut(s) 492
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PscI ACATGT 1 cut(s) 392
PspFI CCCAGC 1 cut(s) 338
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 2 cut(s) 324, 583
RsaNI GTAC 2 cut(s) 323, 582
RseI CAYNNNNRTG 2 cut(s) 318, 570
SaqAI TTAA 2 cut(s) 111, 637
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 463
SduI GDGCHC 1 cut(s) 565
SetI ASST 4 cut(s) 271, 337, 370, 503
SfaNI GCATC 1 cut(s) 613
SmiMI CAYNNNNRTG 2 cut(s) 318, 570
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 5 cut(s) 213, 361, 455, 474, 508
SspI AATATT 1 cut(s) 544
SspMI CTAG 2 cut(s) 309, 633
TaaI ACNGT 1 cut(s) 317
TasI AATT 5 cut(s) 213, 361, 455, 474, 508
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 2 cut(s) 440, 554
Tru1I TTAA 2 cut(s) 111, 637
Tru9I TTAA 2 cut(s) 111, 637
TseFI GTSAC 2 cut(s) 197, 311
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 2 cut(s) 197, 311
TspDTI ATGAA 6 cut(s) 17, 58, 432, 588, 603, 630
VneI GTGCAC 1 cut(s) 561
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 2 cut(s) 309, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.