Rroxscaffold_3G00231810

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000450
Physical Location & Seq
Forward (+)
17177765 .. 17180011
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231810.1

Sequence Viewer

Length: 1377 bp
ATGGCAAAGAAAGCAACAGGTCGCAAAACGGCAGTAAGCGGGACAGCAGACATTACTACATCGATCACTGATAATGAAAGACAACAGACCGTTATGGCAAAAAAAACAACAAGTCATAGTAGGTCATTTAACAGAACACAAGATACCAGTACACCAGTTAATGTTAGTGAAGCACAAGAGACTGACATTGCAAAGAAACCAAAGAGTCGCAAAAGACCATTAAGCACAGATAGTATTACACCTTCTAATGACAGTGAAGAGCAAGAAACTGAAGAGACAGGGTCTGAGTCTCAACCTTCAAATGCAACAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCCAGCTGATATACATGACGGAAGGATCATAACCCCTCAAGCAACACGTGCAATATTCCCACTCTTCAAGCAAGAGCTGACGGAGCCATTTACAACATGGCCTCAATACAAAAAGCAAGGAAAGAACTTGAAAAGGGTGTATGAACGTTGGCAAGAATGTAACTTCAAATTCACATGCTCTGAAGAAGATGTAAAGAATGCATTTGAAAAGCATATTGAAAATCGATATCTTGACTGGATGAGCGCAATAAGGAATAGCATTTTCAAAAAGCATAAAACCGCTGCAGCTCGTTATGCTAATTGCCCAAAAGGAATAAAGCGAAATGTGTGGGCCCAATTGGTTGAAGAATGGTTGAAACCTGAATGGCAGGAGATGAGTGAAAGAAACAAAACTAATTGGGATAAATCAACCATTGTTCACACAACGGGCACGGTTCCAATGGCAAAATGGCGCAAAGAGGAGCTTGATCGAAATGGAGTCGAACCTAGCCCAATAGAGTGTTGGAGGAAGTTCCATGTAACTAAAGCAAAGGAAGGAAAAGAAGAACATTGGAAAAGTGACAAGGCTAAGGAAATTTATGATGATCTTACTGAAAAAAAGAATAGAGTGGAAGAAGTGTTTGGTGAAGCTGATGATTGGGAAATATATCAGAAAGTGATTGGTGGGCCTAGTCACGGTCGTGTACTTGGTTTAGGTGTTGGGGTGAAACTAAAAGATTACACTTCACCTAACCAAACTTGTAATAAGCCTACATGTTTGGAACAAAAAGAAGATTATGAAAGAGTGAAAGGCCAAGTTGAATCTCTGACAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTACCTAATACCTCAGAGAATTCTAAAGCAAGAAACTCACATTCTGTGGACAATATTGCAACAGATTCAAGTGCACACCATGATGAAGATGGTACTGATGAAGATGGTGATGAAGATGTTGCTGATGACTATGATGCAAACTCTAATGAGGACTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

458

Amino Acids

52.05

Weight (kDa)

6.24

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 230 - 357 8.2e-16 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 39, 645
AclI AACGTT 1 cut(s) 511
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 3 cut(s) 533, 939, 1234
AcuI CTGAAG 2 cut(s) 291, 567
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 3 cut(s) 151, 1050, 1309
AfiI CCNNNNNNNGG 1 cut(s) 1040
AflIII ACRYGT 2 cut(s) 410, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 969, 1001
AleI CACNNNNGTG 1 cut(s) 1044
AluBI AGCT 6 cut(s) 341, 371, 442, 653, 829, 995
AluI AGCT 6 cut(s) 341, 371, 442, 653, 829, 995
Alw21I GWGCWC 1 cut(s) 1291
Alw26I GTCTC 3 cut(s) 173, 269, 294
Alw44I GTGCAC 1 cut(s) 1287
AlwI GGATC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 4 cut(s) 464, 696, 1031, 1156
ApaI GGGCCC 1 cut(s) 700
ApaLI GTGCAC 1 cut(s) 1287
ApeKI GCWGC 2 cut(s) 647, 650
ApoI RAATTY 3 cut(s) 533, 939, 1234
AspLEI GCGC 2 cut(s) 611, 819
AspS9I GGNCC 4 cut(s) 311, 696, 697, 1031
AsuHPI GGTGA 5 cut(s) 359, 1001, 1081, 1083, 1334
AvaII GGWCC 1 cut(s) 311
BaeGI GKGCMC 3 cut(s) 700, 797, 1291
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbrPI CACGTG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 1291
BbvI GCAGC 2 cut(s) 634, 662
BccI CCATC 2 cut(s) 1298, 1313
BceAI ACGGC 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 173, 269, 294
BfaI CTAG 2 cut(s) 852, 1035
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 2 cut(s) 648, 651
BlsI GCNGC 2 cut(s) 649, 652
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 4 cut(s) 311, 696, 697, 1031
BmiI GGNNCC 3 cut(s) 450, 698, 801
BmsI GCATC 1 cut(s) 1339
Bpu10I CCTNAGC 2 cut(s) 342, 933
BpuEI CTTGAG 1 cut(s) 387
Bsa29I ATCGAT 2 cut(s) 62, 589
BsaAI YACGTR 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 1040
Bse1I ACTGG 3 cut(s) 147, 155, 605
Bse3DI GCAATG 1 cut(s) 186
BseCI ATCGAT 2 cut(s) 62, 589
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 1 cut(s) 1040
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 276, 1242
BseNI ACTGG 3 cut(s) 147, 155, 605
BseRI GAGGAG 1 cut(s) 839
BseSI GKGCMC 3 cut(s) 700, 797, 1291
BseXI GCAGC 2 cut(s) 634, 662
Bsh1285I CGRYCG 1 cut(s) 1045
BshFI GGCC 4 cut(s) 466, 698, 1033, 1158
BshVI ATCGAT 2 cut(s) 62, 589
BsiEI CGRYCG 1 cut(s) 1045
BsiHKAI GWGCWC 1 cut(s) 1291
BslFI GGGAC 2 cut(s) 55, 369
BslI CCNNNNNNNGG 1 cut(s) 1040
BsmAI GTCTC 3 cut(s) 173, 269, 294
BsmFI GGGAC 2 cut(s) 55, 369
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 4 cut(s) 466, 698, 1033, 1158
Bsp120I GGGCCC 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 700, 797, 1291
Bsp143I GATC 4 cut(s) 63, 390, 832, 949
BspACI CCGC 2 cut(s) 39, 645
BspANI GGCC 4 cut(s) 466, 698, 1033, 1158
BspCNI CTCAG 2 cut(s) 277, 1241
BspDI ATCGAT 2 cut(s) 62, 589
BspLI GGNNCC 3 cut(s) 450, 698, 801
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 1 cut(s) 398
BspQI GCTCTTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 3 cut(s) 147, 155, 605
BssMI GATC 4 cut(s) 63, 390, 832, 949
Bst4CI ACNGT 4 cut(s) 91, 254, 799, 1043
Bst6I CTCTTC 3 cut(s) 252, 267, 434
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 365, 369
BstDEI CTNAG 5 cut(s) 285, 318, 342, 933, 1228
BstF5I GGATG 1 cut(s) 609
BstHHI GCGC 2 cut(s) 611, 819
BstKTI GATC 4 cut(s) 66, 393, 835, 952
BstMAI GTCTC 3 cut(s) 173, 269, 294
BstMBI GATC 4 cut(s) 63, 390, 832, 949
BstMCI CGRYCG 1 cut(s) 1045
BstMWI GCNNNNNNNGC 4 cut(s) 11, 413, 448, 659
BstNSI RCATGY 3 cut(s) 367, 543, 1122
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 3 cut(s) 700, 797, 1291
BstV1I GCAGC 2 cut(s) 634, 662
Bsu15I ATCGAT 2 cut(s) 62, 589
BsuRI GGCC 4 cut(s) 466, 698, 1033, 1158
BsuTUI ATCGAT 2 cut(s) 62, 589
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 66, 259
Cac8I GCNNGC 2 cut(s) 365, 369
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 2 cut(s) 611, 819
Cfr13I GGNCC 4 cut(s) 311, 696, 697, 1031
ClaI ATCGAT 2 cut(s) 62, 589
Csp6I GTAC 3 cut(s) 150, 1049, 1308
CviAII CATG 8 cut(s) 359, 364, 380, 462, 540, 881, 1119, 1295
CviQI GTAC 3 cut(s) 150, 1049, 1308
DdeI CTNAG 5 cut(s) 285, 318, 342, 933, 1228
DpnI GATC 4 cut(s) 65, 392, 834, 951
DpnII GATC 4 cut(s) 63, 390, 832, 949
Eam1104I CTCTTC 3 cut(s) 252, 267, 434
EarI CTCTTC 3 cut(s) 252, 267, 434
Eco24I GRGCYC 1 cut(s) 700
Eco32I GATATC 1 cut(s) 593
Eco47I GGWCC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 291, 567
Eco72I CACGTG 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 1234
EcoRV GATATC 1 cut(s) 593
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 700
FaeI CATG 8 cut(s) 362, 367, 383, 465, 543, 884, 1122, 1298
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 2 cut(s) 55, 369
FatI CATG 8 cut(s) 358, 363, 379, 461, 539, 880, 1118, 1294
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 648, 651
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 2 cut(s) 648, 651
FspBI CTAG 2 cut(s) 852, 1035
GlaI GCGC 2 cut(s) 610, 818
GluI GCNGC 2 cut(s) 648, 651
HaeIII GGCC 4 cut(s) 466, 698, 1033, 1158
HhaI GCGC 2 cut(s) 611, 819
Hin1II CATG 8 cut(s) 362, 367, 383, 465, 543, 884, 1122, 1298
Hin6I GCGC 2 cut(s) 609, 817
HinP1I GCGC 2 cut(s) 609, 817
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HinfI GANTC 6 cut(s) 205, 287, 843, 1166, 1195, 1280
HphI GGTGA 5 cut(s) 359, 1001, 1081, 1083, 1334
Hpy166II GTNNAC 6 cut(s) 152, 784, 1049, 1194, 1264, 1289
Hpy188I TCNGA 5 cut(s) 286, 547, 1017, 1173, 1231
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 6 cut(s) 152, 784, 1049, 1194, 1264, 1289
HpyAV CCTTC 4 cut(s) 252, 306, 381, 893
HpyCH4III ACNGT 4 cut(s) 91, 254, 799, 1043
HpyCH4IV ACGT 2 cut(s) 412, 511
HpyCH4V TGCA 8 cut(s) 191, 305, 416, 566, 650, 1274, 1289, 1352
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 413, 448, 659
HpyF3I CTNAG 5 cut(s) 285, 318, 342, 933, 1228
HpySE526I ACGT 2 cut(s) 412, 511
Hsp92II CATG 8 cut(s) 362, 367, 383, 465, 543, 884, 1122, 1298
HspAI GCGC 2 cut(s) 609, 817
Kzo9I GATC 4 cut(s) 63, 390, 832, 949
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 338, 448, 826
LpnPI CCDG 9 cut(s) 3, 160, 168, 264, 294, 381, 586, 719, 738
Lsp1109I GCAGC 2 cut(s) 634, 662
LweI GCATC 1 cut(s) 1339
MaeI CTAG 2 cut(s) 852, 1035
MaeII ACGT 2 cut(s) 412, 511
MaeIII GTNAC 4 cut(s) 524, 883, 923, 1037
MalI GATC 4 cut(s) 65, 392, 834, 951
MboI GATC 4 cut(s) 63, 390, 832, 949
MfeI CAATTG 1 cut(s) 701
MhlI GDGCHC 3 cut(s) 700, 797, 1291
MluCI AATT 8 cut(s) 533, 664, 701, 760, 939, 1181, 1200, 1234
MlyI GAGTC 4 cut(s) 214, 296, 852, 1189
MmeI TCCRAC 1 cut(s) 848
MnlI CCTC 8 cut(s) 324, 326, 411, 477, 817, 864, 1237, 1357
Mph1103I ATGCAT 1 cut(s) 568
MseI TTAA 3 cut(s) 129, 159, 221
MslI CAYNNNNRTG 2 cut(s) 1044, 1296
MspA1I CMGCKG 2 cut(s) 371, 647
MunI CAATTG 1 cut(s) 701
Mva1269I GAATGC 1 cut(s) 568
MwoI GCNNNNNNNGC 4 cut(s) 11, 413, 448, 659
NdeII GATC 4 cut(s) 63, 390, 832, 949
NlaIII CATG 8 cut(s) 362, 367, 383, 465, 543, 884, 1122, 1298
NlaIV GGNNCC 3 cut(s) 450, 698, 801
NmuCI GTSAC 2 cut(s) 923, 1037
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 3 cut(s) 367, 543, 1122
OliI CACNNNNGTG 1 cut(s) 1044
PaeI GCATGC 1 cut(s) 367
PciI ACATGT 1 cut(s) 1118
PciSI GCTCTTC 1 cut(s) 252
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 1166, 1280
PflFI GACNNNGTC 1 cut(s) 280
PkrI GCNGC 2 cut(s) 649, 652
PleI GAGTC 4 cut(s) 213, 295, 851, 1189
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 4 cut(s) 213, 295, 851, 1189
Ppu21I YACGTR 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 1 cut(s) 1118
Psp1406I AACGTT 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 311
PspCI CACGTG 1 cut(s) 413
PspN4I GGNNCC 3 cut(s) 450, 698, 801
PspOMI GGGCCC 1 cut(s) 696
PspPI GGNCC 4 cut(s) 311, 696, 697, 1031
PspPPI RGGWCCY 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 127, 159
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 151, 1050, 1309
RsaNI GTAC 3 cut(s) 150, 1049, 1308
RseI CAYNNNNRTG 2 cut(s) 1044, 1296
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 3 cut(s) 129, 159, 221
SatI GCNGC 2 cut(s) 648, 651
Sau3AI GATC 4 cut(s) 63, 390, 832, 949
Sau96I GGNCC 4 cut(s) 311, 696, 697, 1031
SchI GAGTC 4 cut(s) 214, 296, 852, 1189
SduI GDGCHC 3 cut(s) 700, 797, 1291
SfaNI GCATC 1 cut(s) 1339
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 2 cut(s) 1044, 1296
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SphI GCATGC 1 cut(s) 367
Sse9I AATT 8 cut(s) 533, 664, 701, 760, 939, 1181, 1200, 1234
SsiI CCGC 2 cut(s) 39, 645
SspI AATATT 2 cut(s) 420, 1270
SspMI CTAG 2 cut(s) 852, 1035
TaaI ACNGT 4 cut(s) 91, 254, 799, 1043
TaiI ACGT 2 cut(s) 415, 514
TaqI TCGA 4 cut(s) 62, 589, 835, 846
TasI AATT 8 cut(s) 533, 664, 701, 760, 939, 1181, 1200, 1234
TatI WGTACW 2 cut(s) 149, 1048
TfiI GAWTC 2 cut(s) 1166, 1280
Tru1I TTAA 3 cut(s) 129, 159, 221
Tru9I TTAA 3 cut(s) 129, 159, 221
TscAI CASTG 2 cut(s) 73, 259
TseFI GTSAC 2 cut(s) 923, 1037
TseI GCWGC 2 cut(s) 647, 650
Tsp45I GTSAC 2 cut(s) 923, 1037
TspDTI ATGAA 6 cut(s) 90, 522, 1158, 1314, 1329, 1341
TspGWI ACGGA 2 cut(s) 399, 461
TspRI CASTG 2 cut(s) 73, 259
Tth111I GACNNNGTC 1 cut(s) 280
VneI GTGCAC 1 cut(s) 1287
VpaK11BI GGWCC 1 cut(s) 311
XapI RAATTY 3 cut(s) 533, 939, 1234
XceI RCATGY 3 cut(s) 367, 543, 1122
XcmI CCANNNNNNNNNTGG 4 cut(s) 459, 810, 864, 1301
XspI CTAG 2 cut(s) 852, 1035
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.