Rh4CG217400

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000450
Physical Location & Seq
Forward (+)
44908076 .. 44918152
10077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG217400.1

Sequence Viewer

Length: 249 bp
ATGGAGGCCCAAACAAAGCCAAAGGCAGGCAACAAGCCCCTCAACACATCGTCCCCGACATACCCCTCCCCGTCAGCGACGAGCTCGCACGCCGTTTCCCGAACCCTGTATCGATTGCATCGCCAAGTCGCCGACACTGTGGGAAAAATCCCAAACATGTCAGCCCTCCCCTACTCCCCTCTCCGGTGCTGGACCTGCCGCTCCGTCCTCAACCCCTTCTCCACCGTCAAGTACGCCGCCAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

82

Amino Acids

8.98

Weight (kDa)

10.18

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 2 cut(s) 199, 237
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 26, 183
AflIII ACRYGT 1 cut(s) 156
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw21I GWGCWC 1 cut(s) 86
AoxI GGCC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 7, 192
AvaII GGWCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 77
BfaI CTAG 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 203
BglII AGATCT 1 cut(s) 243
BisI GCNGC 2 cut(s) 199, 237
BlsI GCNGC 2 cut(s) 200, 238
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 7, 192
BmsI GCATC 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 112
BsaWI WCCGGW 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 183
BseCI ATCGAT 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 26, 183
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 26, 183
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 199, 237
BspANI GGCC 1 cut(s) 8
BspDI ATCGAT 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 201
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 139, 226
BstC8I GCNNGC 3 cut(s) 28, 86, 90
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 203
Cac8I GCNNGC 3 cut(s) 28, 86, 90
Cfr13I GGNCC 2 cut(s) 7, 192
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 8, 19, 37, 84, 164
CviKI_1 RGCY 5 cut(s) 8, 19, 37, 84, 164
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 61, 158
FaqI GGGAC 1 cut(s) 37
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 199, 237
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 2 cut(s) 199, 237
FspBI CTAG 1 cut(s) 247
GluI GCNGC 2 cut(s) 199, 237
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 184
Hin1II CATG 1 cut(s) 160
HpaII CCGG 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 139, 226
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 12, 119, 175, 197, 208
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 247
MalI GATC 1 cut(s) 245
MbiI CCGCTC 1 cut(s) 201
MboI GATC 1 cut(s) 243
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 86
MnlI CCTC 5 cut(s) 50, 76, 176, 189, 218
MspI CCGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 160
NspI RCATGY 1 cut(s) 160
PciI ACATGT 1 cut(s) 156
PkrI GCNGC 2 cut(s) 200, 238
PscI ACATGT 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 7, 192
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 86
SatI GCNGC 2 cut(s) 199, 237
Sau3AI GATC 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 7, 192
SduI GDGCHC 1 cut(s) 86
SetI ASST 2 cut(s) 86, 197
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 192
SsiI CCGC 2 cut(s) 199, 237
SspMI CTAG 1 cut(s) 247
SstI GAGCTC 1 cut(s) 86
TaaI ACNGT 2 cut(s) 139, 226
TaqI TCGA 1 cut(s) 112
TauI GCSGC 2 cut(s) 201, 239
TscAI CASTG 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.