Rmu_sc0000898.1_g000045

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000898.1
OG0000450
Physical Location & Seq
Forward (+)
205736 .. 206305
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000898.1_g000045.1.cds

Sequence Viewer

Length: 570 bp
atgcattcgggtcgggcttcggaccgaaccgaaaatttcaatactaaaccgaaccgaatcgggcttttttcatcggttcgggtcgggtcctcggtctttcgggtccggacgcccagccctactgtacaacatgatgtgacgaagaaaacacaaaatagcggagttatggtcaaaggagataaccaaattaattgtgtgccttggtatggaacccttacagacgtcgttgagctctggtatacagatcacaataaagttgtcttgtttcactgtaattggtttgacacagctaccaaaggcaaagattataaggaagatcgttatggcatactaagtgtcaacaataagggtaagttgaatacccaagagccatttgtgctggcatctcaagcaacccaggtttattatgttgaaggaataaaaaacagtgcttgtagtgtcgtggtggaaaccaaacccagaaacgtttttgaaatgcctactaatgaagaggaaccgtatcaagaagaagaatctcagacgagtcacacatatgcaaaccgtaacgaggaagaagataatgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

189

Amino Acids

21.61

Weight (kDa)

5.45

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AatII GACGTC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 1 cut(s) 159
AclI AACGTT 1 cut(s) 465
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 2 cut(s) 110, 222
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 206, 547
AgsI TTSAA 4 cut(s) 40, 358, 413, 473
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 232, 290
AluI AGCT 2 cut(s) 232, 290
Alw21I GWGCWC 1 cut(s) 234
Aor13HI TCCGGA 1 cut(s) 105
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 189
AspS9I GGNCC 3 cut(s) 22, 87, 103
AvaII GGWCC 3 cut(s) 22, 87, 103
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BcgI CGANNNNNNTGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 398
Bme18I GGWCC 3 cut(s) 22, 87, 103
BmgT120I GGNCC 3 cut(s) 22, 87, 103
BmiI GGNNCC 4 cut(s) 88, 104, 211, 495
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 372
BsaHI GRCGYC 2 cut(s) 110, 222
BsaJI CCNNGG 3 cut(s) 90, 200, 396
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 547
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 90, 200, 396
BseLI CCNNNNNNNGG 2 cut(s) 206, 547
BseMII CTCAG 1 cut(s) 530
BseYI CCCAGC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 206, 547
BsmI GAATGC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 234
Bsp13I TCCGGA 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 244, 316
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 529
BspEI TCCGGA 1 cut(s) 105
BspLI GGNNCC 4 cut(s) 88, 104, 211, 495
BsrGI TGTACA 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 90, 200, 396
BssMI GATC 2 cut(s) 244, 316
BssNAI GTATAC 1 cut(s) 240
BssNI GRCGYC 2 cut(s) 110, 222
BssT1I CCWWGG 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 5 cut(s) 124, 272, 428, 498, 542
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 2 cut(s) 110, 222
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 332, 516
BstKTI GATC 2 cut(s) 247, 319
BstMBI GATC 2 cut(s) 244, 316
BstMWI GCNNNNNNNGC 2 cut(s) 376, 389
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstZ17I GTATAC 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 268, 433
Cac8I GCNNGC 1 cut(s) 381
Cfr13I GGNCC 3 cut(s) 22, 87, 103
CpoI CGGWCCG 1 cut(s) 22
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 125
CspI CGGWCCG 1 cut(s) 22
CviAII CATG 1 cut(s) 131
CviJI RGCY 6 cut(s) 17, 64, 117, 232, 290, 370
CviKI_1 RGCY 6 cut(s) 17, 64, 117, 232, 290, 370
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 2 cut(s) 332, 516
DpnI GATC 2 cut(s) 246, 318
DpnII GATC 2 cut(s) 244, 316
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 3 cut(s) 22, 87, 103
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 396
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 1 cut(s) 134
FatI CATG 1 cut(s) 130
FauNDI CATATG 1 cut(s) 532
FblI GTMKAC 1 cut(s) 239
FriOI GRGCYC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 117
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 2 cut(s) 110, 222
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 3 cut(s) 57, 512, 523
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 240, 340
Hpy188I TCNGA 2 cut(s) 22, 519
Hpy188III TCNNGA 2 cut(s) 106, 503
Hpy8I GTNNAC 2 cut(s) 240, 340
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 5 cut(s) 124, 272, 428, 498, 542
HpyCH4IV ACGT 2 cut(s) 222, 465
HpyCH4V TGCA 2 cut(s) 4, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 389
HpyF3I CTNAG 2 cut(s) 332, 516
HpySE526I ACGT 2 cut(s) 222, 465
Hsp92I GRCGYC 2 cut(s) 110, 222
Hsp92II CATG 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 244, 316
LpnPI CCDG 7 cut(s) 119, 127, 220, 365, 383, 410, 472
LweI GCATC 1 cut(s) 392
MaeII ACGT 2 cut(s) 222, 465
MaeIII GTNAC 3 cut(s) 136, 524, 542
MalI GATC 2 cut(s) 246, 318
MboI GATC 2 cut(s) 244, 316
MboII GAAGA 7 cut(s) 154, 326, 500, 518, 521, 563, 566
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 34, 186, 190, 274
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 3 cut(s) 100, 484, 541
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 105
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 376, 389
NdeI CATATG 1 cut(s) 532
NdeII GATC 2 cut(s) 244, 316
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 4 cut(s) 88, 104, 211, 495
NmuCI GTSAC 2 cut(s) 136, 524
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 57, 512
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 189
PsiI TTATAA 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 396
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 4 cut(s) 88, 104, 211, 495
PspPI GGNCC 3 cut(s) 22, 87, 103
PspPPI RGGWCCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 531
Rsr2I CGGWCCG 1 cut(s) 22
RsrII CGGWCCG 1 cut(s) 22
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 2 cut(s) 244, 316
Sau96I GGNCC 3 cut(s) 22, 87, 103
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 1 cut(s) 234
SetI ASST 5 cut(s) 225, 234, 292, 402, 468
SfaNI GCATC 1 cut(s) 392
SinI GGWCC 3 cut(s) 22, 87, 103
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 4 cut(s) 34, 186, 190, 274
SsiI CCGC 1 cut(s) 159
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 396
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 5 cut(s) 124, 272, 428, 498, 542
TaiI ACGT 2 cut(s) 225, 468
TaqII GACCGA 2 cut(s) 39, 82
TasI AATT 4 cut(s) 34, 186, 190, 274
TatI WGTACW 1 cut(s) 124
TfiI GAWTC 2 cut(s) 57, 512
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 275, 433
TseFI GTSAC 2 cut(s) 136, 524
Tsp45I GTSAC 2 cut(s) 136, 524
TspDTI ATGAA 2 cut(s) 60, 501
TspRI CASTG 2 cut(s) 275, 433
VpaK11BI GGWCC 3 cut(s) 22, 87, 103
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 239
ZraI GACGTC 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.