RLG00000020143

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000450
Physical Location & Seq
Forward (+)
61580642 .. 61581301
660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020143

Sequence Viewer

Length: 435 bp
ATGAGTGCCACAATCGAAGAGAGAGGGGCTTGGTCGCCTCCTCTCTCTAGCTCCTCCCTGACATGGGCTTCCCTGTCGGCAAACCCTCAGTCCCCGACATACCCGTCCCCGTCAACGATGAGCTCGCACGCCGTTTACCTAACTCTGTATCGATCGCATCGCCGACACTTTGGGAAAGTACGAAGCTTTGTCTTGGATGTGCGGAGGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTGGCCGTGTGGAACGACAAGTTTTCTATTGGCTTCTATCATTTTCATTGGTATTAATTGTTGCAGTTATGGCAAAGCAAAGACTCAAAAGGGCATTAAGCTTCTCACGTCCTAAGTCATCTGGTCTCCCTTCAAACCAAAACTCTCACAACGGGTCATCAACTCACAACGAAACACAAGACATGGAGGCTAGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

11.28

Isoelectric Point (pI)

82.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AciI CCGC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 63, 64
AgsI TTSAA 1 cut(s) 369
AjiI CACGTC 1 cut(s) 344
AluBI AGCT 5 cut(s) 51, 123, 186, 214, 336
AluI AGCT 5 cut(s) 51, 123, 186, 214, 336
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 365
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 214
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AseI ATTAAT 1 cut(s) 290
BanII GRGCYC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 201
BceAI ACGGC 2 cut(s) 116, 225
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 48, 426
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 344
BmsI GCATC 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 64
BseCI ATCGAT 1 cut(s) 151
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 63, 64
BseMII CTCAG 2 cut(s) 101, 201
BseRI GAGGAG 2 cut(s) 30, 43
BseXI GCAGC 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 2 cut(s) 76, 91
BslI CCNNNNNNNGG 2 cut(s) 63, 64
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 2 cut(s) 76, 91
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 100, 202
BspDI ATCGAT 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 365
BssMI GATC 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 125, 129
BstDEI CTNAG 3 cut(s) 87, 210, 348
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 1 cut(s) 152
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 201
Bsu15I ATCGAT 1 cut(s) 151
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 151
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 125, 129
ClaI ATCGAT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 179
CviAII CATG 2 cut(s) 63, 418
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 3 cut(s) 87, 210, 348
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 66, 421
FaiI YATR 4 cut(s) 64, 100, 305, 419
FaqI GGGAC 2 cut(s) 76, 91
FatI CATG 2 cut(s) 62, 417
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 48, 426
GluI GCNGC 1 cut(s) 215
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 240
Hin1II CATG 2 cut(s) 66, 421
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 2 cut(s) 184, 334
HinfI GANTC 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 114, 136
Hpy188I TCNGA 1 cut(s) 211
Hpy8I GTNNAC 2 cut(s) 114, 136
HpyAV CCTTC 1 cut(s) 375
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 87, 210, 348
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 2 cut(s) 66, 421
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 71, 86, 213, 342
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 166
MaeI CTAG 2 cut(s) 48, 426
MaeII ACGT 1 cut(s) 343
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 7 cut(s) 17, 48, 51, 64, 96, 198, 415
MseI TTAA 2 cut(s) 290, 332
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 152
NlaIII CATG 2 cut(s) 66, 421
PkrI GCNGC 1 cut(s) 216
Ple19I CGATCG 1 cut(s) 155
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PshBI ATTAAT 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 227
PvuI CGATCG 1 cut(s) 155
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SacI GAGCTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 290, 332
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 125
SetI ASST 8 cut(s) 53, 125, 141, 188, 209, 216, 338, 346
SfaNI GCATC 1 cut(s) 166
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 202
SspMI CTAG 2 cut(s) 48, 426
SstI GAGCTC 1 cut(s) 125
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 15, 151
TasI AATT 1 cut(s) 291
Tru1I TTAA 2 cut(s) 290, 332
Tru9I TTAA 2 cut(s) 290, 332
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 270
VspI ATTAAT 1 cut(s) 290
XspI CTAG 2 cut(s) 48, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.