Rh4DG018500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000450
Physical Location & Seq
Reverse (-)
2905278 .. 2905729
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG018500.1

Sequence Viewer

Length: 348 bp
ATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAAGTCAGAGTTGCAAGGCCCATTCATAACATGGGCACAATATCCGCAAGATCAATTGGATAAGTTGTTTGACCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATAGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACACTCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.81

Weight (kDa)

7.82

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AciI CCGC 2 cut(s) 113, 262
AcsI RAATTY 3 cut(s) 157, 164, 243
AgsI TTSAA 3 cut(s) 70, 163, 313
AluBI AGCT 2 cut(s) 44, 284
AluI AGCT 2 cut(s) 44, 284
AoxI GGCC 2 cut(s) 59, 85
ApeKI GCWGC 2 cut(s) 278, 281
ApoI RAATTY 3 cut(s) 157, 164, 243
AspS9I GGNCC 2 cut(s) 60, 86
BaeGI GKGCMC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 265, 293
BfmI CTRYAG 1 cut(s) 279
BisI GCNGC 2 cut(s) 279, 282
BlsI GCNGC 2 cut(s) 280, 283
BmgT120I GGNCC 2 cut(s) 60, 86
BmiI GGNNCC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 265, 293
BshFI GGCC 2 cut(s) 61, 87
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 61, 87
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 2 cut(s) 113, 262
BspANI GGCC 2 cut(s) 61, 87
BspLI GGNNCC 1 cut(s) 62
BspMAI CTGCAG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 71
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 265, 293
BstXI CCANNNNNNTGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 61, 87
BtsCI GGATG 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 60, 86
CviAII CATG 1 cut(s) 99
CviJI RGCY 5 cut(s) 44, 61, 87, 284, 316
CviKI_1 RGCY 5 cut(s) 44, 61, 87, 284, 316
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 1 cut(s) 102
FaiI YATR 9 cut(s) 18, 32, 95, 100, 145, 210, 225, 291, 325
FatI CATG 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 279, 282
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 279, 282
GluI GCNGC 2 cut(s) 279, 282
HaeIII GGCC 2 cut(s) 61, 87
Hin1II CATG 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 1 cut(s) 217
Hpy188I TCNGA 3 cut(s) 76, 178, 249
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 8, 82, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
Hsp92II CATG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 2 cut(s) 217, 330
Lsp1109I GCAGC 2 cut(s) 265, 293
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 3 cut(s) 58, 160, 194
MfeI CAATTG 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 4 cut(s) 122, 157, 164, 243
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 3 cut(s) 18, 74, 172
MunI CAATTG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 102
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 227
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 280, 283
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 86
PstI CTGCAG 1 cut(s) 283
SatI GCNGC 2 cut(s) 279, 282
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 60, 86
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 106
SetI ASST 3 cut(s) 46, 144, 286
SfcI CTRYAG 1 cut(s) 279
Sse9I AATT 4 cut(s) 122, 157, 164, 243
SsiI CCGC 2 cut(s) 113, 262
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 122, 157, 164, 243
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 278, 281
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 82
TspGWI ACGGA 2 cut(s) 218, 291
XapI RAATTY 3 cut(s) 157, 164, 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.