Rorug05G0185600

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000450
Physical Location & Seq
Forward (+)
17980698 .. 17983904
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0185600.1

Sequence Viewer

Length: 2532 bp
ATGGTGAAGTTTACTGCAGAAGAGTTGCGAAGGATTATGGACTACAAGCACAACATTCGTAATATGTCCGTTATTGCCCATGTCGATCATGGTAAATCAACCCTTACAGACTCCCTTGTCGCTGCTGCTGGTATCATTGCACAAGAAACTGCTGGTGATGTCCGGATGACGGATACCCGTGCAGATGAGGCAGAGCGTGGTATCACAATTAAGTCAACTGGAATCTCTCTCTACTATGAGATGACAGATGAGTCTTTGGCGAGCTTCAAGGGAGAGAGGAATGGAAATGAGTACCTTATCAATCTCATTGATTCCCCTGGGCATGTTGACTTTTCATCTGAGGTCACTGCTGCTCTTCGTATTACTGATGGTGCACTTGTGGTGGTGGATTGTATTGAGGGCGTGTGTGTCCAAACTGAGACTGTGCTCCGTCAAGCCTTGGGAGAAAGGATCAGGCCTGTGTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAGGTGGATGGTGAAGAGGCCTACCAGAATTTTCAGAGGGTTATTGAGAATGCTAATGTCATCATGGCTACCTATGAAGACCCTCTTCTTGGTGATGTCCAGGTCTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCTTTTACTTTAACCAACTTTGCCAAGATGTATGCCGAAAAGTTTAAAGTTGATGAGGCAAAGATGATGGAAAGGCTTTGGGGTGAGAACTTTTTTGACCCAGCAACCAAGAAGTGGACCAGCAAGAACACCGGTTCTGCTACCTGCAAGCGTGGTTTCGTTCAGTTCTGTTATGAACCCATCAAGCAGGTTATCGCTACCTGCATGAATGACCAGAAGGATAAGCTGTGGCCCATGTTGGCAAAGCTTGGAATCACCATGAAGGGTGACGAGAAAGATCTGATGGGAAAGCCATTGATGAAGAGGGTCATGCAGACCTGGCTGCCAGCCAGCACTGCCCTATTGGAGATGATGATCTTTCACCTTCCCTCTCCACATACAGCTCAGAGGTATCGTGTGGAGAATCTGTACGAGGGTCCCCTGGATGATCAGTATGCTAATGCTATCAGAAACTGCGATCCTGATGGTCCTCTTATGCTCTATGTATCTAAGATGATTCCTGCATCTGACAAGGGTAGGTTCTTTGCCTTTGGCCGTGTGTTTGCTGGGAGGGTCCAAACAGGTATGAAGGTTAGAATCATGGGACCAAACTATGTTCCCGGCGAAAAGAAGGATCTGTATGTTAAGAATGTACAGAGGACTGTTATCTGGATGGGAAAGAAACAAGAAACTGTTGAGGATGTTCCCTGTGGTAACACTGTTGCCTTGGTTGGTCTGGATCAGTTCATCATCAAGAATGCCACCTTGACAAATGAGAAGGAATCTGATGCTCACCCCATTCGTGCTATGAAGTTCTCTGTCTCACCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCTTCAGATCTTCCCAAGCTTGTTGAAGGTCTCAAGCGTCTGGCAAAGTCTGATCCTATGGTTGTCTGTTCTATTGAGGAGTCTGGAGAGCACATTATTGCCGGTGCTGGTGAACTCCACCTTGAGATCTGTTTGAAGGATCTTCAGGATGATTTTATGGGTGGAGCTGAAATTGTGAAATCTGACCCTGTTGTGTCCTTCCGTGAGACTGTCCTTGAGAAGTCTGTCCGTACAGTGATGAGCAAGTCCCCCAACAAGCATAACCGTCTGTACATGGAAGCACGCCCATTGGAAGAAGGTCTTGCAGAGGCCATTGATGATGGCCGTATTGGTCAAAGGGATGATCCTAAAATTCGTTCCAAGATCTTGGCTGAGGAATTTGGTTGGGACAAGGATCTTGCTAAGAAAATCTGGTGTTTTGGCCCTGAGACAACTGGTCCTAACATGGTCGTCGACATGTGTAAGGGAGTTCAGTACCTCAATGAAATCAAGGACTCTGTTGTTGCTGGGTTCCAGTGGGCTTCAAAGGAAGGTGCATTGGCTGAAGAAAACATGAGGGGTATTTGCTTTGAAGTCTGTGATGTTGTTCTTCATGCTGATGCTATTCACAGAGGAGGTGGTCAGGTCATTCCAACTGCCAGGAGGGTCATCTATGCTTCTCAGCTTACAGCCAAGCCAAGGCTCCTTGAACCCGTATATCTTGTTGAAATTCAAGCCCCTGAGGGTGCTCTCGGTGGTATCTACAGTGTTCTCAATCAGAAGCGTGGACACGTTTTCGAAGAAATTCAGAGGCCTGGTACCCCACTGTACAACATCAAGGCATACCTGCCCGTTGTTGAATCTTTCGGGTTCTCTGGTCAGTTGAGGGCTTCCACTTCAGGACAGGCTTTCCCCCAGTGTATGTTTGATCATTGGGAGATGATGTCTTCTGATCCGTTGGAGGCTGGTTCCCAGGCATCTCAGCTGGTTCAAGACATCCGTAAGAGGAAGGGTTTGAAGGAGCAAATGACCCCGCTTTCTGACTTTGAGGACAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

843

Amino Acids

94.1

Weight (kDa)

5.78

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 18 - 227 6.4e-49 Elongation factor Tu GTP binding domain
EF-G_D2 PF22042 379 - 468 1.5e-06 Elongation factor G domain 2
GTP_EFTU_D2 PF03144 394 - 462 1.1e-10 Elongation factor Tu domain 2
EFG_III PF14492 487 - 549 9.2e-12 Elongation Factor G, domain III
EFG_IV PF03764 610 - 722 1.9e-29 Elongation factor G, domain IV
EFG_C PF00679 724 - 811 1.2e-19 Elongation factor G C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 116, 250
Acc36I ACCTGC 4 cut(s) 806, 832, 863, 2325
Acc65I GGTACC 1 cut(s) 2288
AccB1I GGYRCC 1 cut(s) 2288
AccB7I CCANNNNNTGG 1 cut(s) 768
AccI GTMKAC 2 cut(s) 606, 1944
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 1 cut(s) 2504
AclWI GGATC 9 cut(s) 458, 1106, 1275, 1380, 1538, 1638, 1829, 1893, 2417
AcoI YGGCCR 2 cut(s) 1186, 1813
AcsI RAATTY 5 cut(s) 529, 1842, 1868, 2199, 2274
AcuI CTGAAG 4 cut(s) 1479, 1619, 2055, 2352
AfaI GTAC 8 cut(s) 293, 1064, 1287, 1723, 1763, 1967, 2290, 2300
AfiI CCNNNNNNNGG 5 cut(s) 169, 590, 617, 768, 2169
AflIII ACRYGT 2 cut(s) 1947, 2260
AgeI ACCGGT 1 cut(s) 785
AhdI GACNNNNNGTC 1 cut(s) 1926
AjnI CCWGG 8 cut(s) 316, 501, 600, 971, 1074, 2129, 2284, 2442
AluBI AGCT 9 cut(s) 264, 880, 901, 1037, 1510, 1658, 2155, 2455, 2527
AluI AGCT 9 cut(s) 264, 880, 901, 1037, 1510, 1658, 2155, 2455, 2527
Alw21I GWGCWC 4 cut(s) 376, 429, 1584, 2221
Alw26I GTCTC 5 cut(s) 413, 1459, 1526, 1691, 1913
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 9 cut(s) 458, 1106, 1275, 1380, 1538, 1638, 1829, 1893, 2417
AlwNI CAGNNNCTG 1 cut(s) 1107
Ama87I CYCGRG 1 cut(s) 611
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 8 cut(s) 455, 519, 884, 1186, 1800, 1813, 1912, 2282
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 4 cut(s) 122, 125, 350, 976
ApoI RAATTY 5 cut(s) 529, 1842, 1868, 2199, 2274
AsiGI ACCGGT 1 cut(s) 785
Asp700I GAANNNNTTC 1 cut(s) 2274
Asp718I GGTACC 1 cut(s) 2288
AspS9I GGNCC 8 cut(s) 771, 885, 1070, 1121, 1207, 1238, 1913, 1928
AsuC2I CCSGG 1 cut(s) 1254
AsuII TTCGAA 1 cut(s) 2268
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 6 cut(s) 771, 1070, 1121, 1207, 1238, 1928
AxyI CCTNAGG 1 cut(s) 2211
BaeGI GKGCMC 1 cut(s) 376
BanI GGYRCC 1 cut(s) 2288
BbsI GAAGAC 2 cut(s) 585, 2409
Bbv12I GWGCWC 4 cut(s) 376, 429, 1584, 2221
BbvCI CCTCAGC 1 cut(s) 1863
BbvI GCAGC 4 cut(s) 109, 112, 337, 963
BccI CCATC 9 cut(s) 362, 472, 503, 715, 842, 931, 1112, 1300, 1805
BceAI ACGGC 2 cut(s) 1173, 1800
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 8 cut(s) 318, 503, 602, 973, 1076, 2131, 2286, 2444
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 2 cut(s) 1081, 2398
BcnI CCSGG 1 cut(s) 1254
BcoDI GTCTC 5 cut(s) 413, 1459, 1526, 1691, 1913
BfmI CTRYAG 2 cut(s) 15, 2233
BfuAI ACCTGC 4 cut(s) 806, 832, 863, 2325
BfuI GTATCC 1 cut(s) 166
BglII AGATCT 4 cut(s) 931, 1498, 1617, 1854
BisI GCNGC 4 cut(s) 123, 126, 351, 977
BlsI GCNGC 4 cut(s) 124, 127, 352, 978
Bme1390I CCNGG 9 cut(s) 318, 503, 602, 973, 1076, 1254, 2131, 2286, 2444
Bme18I GGWCC 6 cut(s) 771, 1070, 1121, 1207, 1238, 1928
BmeRI GACNNNNNGTC 1 cut(s) 1926
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 8 cut(s) 771, 885, 1070, 1121, 1207, 1238, 1913, 1928
BmiI GGNNCC 8 cut(s) 1071, 1072, 1208, 1239, 2003, 2174, 2290, 2440
BmrFI CCNGG 9 cut(s) 318, 503, 602, 973, 1076, 1254, 2131, 2286, 2444
BmrI ACTGGG 1 cut(s) 2380
BmsI GCATC 4 cut(s) 1166, 1411, 2080, 2456
BmuI ACTGGG 1 cut(s) 2380
BpiI GAAGAC 2 cut(s) 585, 2409
BpmI CTGGAG 2 cut(s) 485, 1596
Bpu10I CCTNAGC 1 cut(s) 1863
Bpu14I TTCGAA 1 cut(s) 2268
BpuEI CTTGAG 3 cut(s) 1508, 1634, 1727
BpuMI CCSGG 1 cut(s) 1254
BsaBI GATNNNNATC 1 cut(s) 1007
BsaI GGTCTC 1 cut(s) 1526
BsaJI CCNNGG 7 cut(s) 316, 317, 438, 1074, 1359, 2168, 2442
BsaWI WCCGGW 2 cut(s) 162, 785
BsaXI ACNNNNNCTCC 4 cut(s) 1046, 1076, 2399, 2429
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 590, 617, 768, 2169
Bse118I RCCGGY 2 cut(s) 785, 1592
Bse1I ACTGG 4 cut(s) 223, 1930, 2005, 2386
Bse21I CCTNAGG 1 cut(s) 2211
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 1007
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 8 cut(s) 318, 503, 602, 973, 1076, 2131, 2286, 2444
BseDI CCNNGG 7 cut(s) 316, 317, 438, 1074, 1359, 2168, 2442
BseGI GGATG 8 cut(s) 171, 514, 1084, 1311, 1339, 1645, 1837, 2466
BseJI GATNNNNATC 1 cut(s) 1007
BseLI CCNNNNNNNGG 5 cut(s) 169, 590, 617, 768, 2169
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 8 cut(s) 330, 408, 1052, 1854, 1908, 2165, 2202, 2465
BseNI ACTGG 4 cut(s) 223, 1930, 2005, 2386
BseRI GAGGAG 2 cut(s) 1583, 2118
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 4 cut(s) 109, 112, 337, 963
BseYI CCCAGC 3 cut(s) 754, 1199, 1997
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 8 cut(s) 457, 521, 886, 1188, 1802, 1815, 1914, 2284
BshNI GGYRCC 1 cut(s) 2288
BshTI ACCGGT 1 cut(s) 785
BsiHKAI GWGCWC 4 cut(s) 376, 429, 1584, 2221
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 4 cut(s) 163, 786, 1254, 1593
BslFI GGGAC 4 cut(s) 1056, 1251, 1723, 1892
BslI CCNNNNNNNGG 5 cut(s) 169, 590, 617, 768, 2169
BsmAI GTCTC 5 cut(s) 413, 1459, 1526, 1691, 1913
BsmFI GGGAC 4 cut(s) 1056, 1251, 1723, 1892
BsmI GAATGC 2 cut(s) 556, 1396
BsnI GGCC 8 cut(s) 457, 521, 886, 1188, 1802, 1815, 1914, 2284
Bso31I GGTCTC 1 cut(s) 1526
BsoBI CYCGRG 1 cut(s) 611
Bsp119I TTCGAA 1 cut(s) 2268
Bsp1286I GDGCHC 4 cut(s) 376, 429, 1584, 2221
Bsp13I TCCGGA 1 cut(s) 162
Bsp1407I TGTACA 3 cut(s) 1285, 1761, 2298
BspACI CCGC 1 cut(s) 2504
BspANI GGCC 8 cut(s) 457, 521, 886, 1188, 1802, 1815, 1914, 2284
BspCNI CTCAG 8 cut(s) 331, 409, 1051, 1855, 1909, 2164, 2203, 2464
BspEI TCCGGA 1 cut(s) 162
BspLI GGNNCC 8 cut(s) 1071, 1072, 1208, 1239, 2003, 2174, 2290, 2440
BspMAI CTGCAG 1 cut(s) 19
BspMI ACCTGC 4 cut(s) 806, 832, 863, 2325
BspPI GGATC 9 cut(s) 458, 1106, 1275, 1380, 1538, 1638, 1829, 1893, 2417
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 2268
BspT107I GGYRCC 1 cut(s) 2288
BspTNI GGTCTC 1 cut(s) 1526
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 785, 1592
BsrGI TGTACA 3 cut(s) 1285, 1761, 2298
BsrI ACTGG 4 cut(s) 223, 1930, 2005, 2386
BssAI RCCGGY 2 cut(s) 785, 1592
BssECI CCNNGG 7 cut(s) 316, 317, 438, 1074, 1359, 2168, 2442
BssT1I CCWWGG 3 cut(s) 438, 1359, 2168
Bst2UI CCWGG 8 cut(s) 318, 503, 602, 973, 1076, 2131, 2286, 2444
Bst6I CTCTTC 5 cut(s) 15, 360, 510, 591, 950
BstAUI TGTACA 3 cut(s) 1285, 1761, 2298
BstBI TTCGAA 1 cut(s) 2268
BstC8I GCNNGC 5 cut(s) 262, 803, 981, 985, 1774
BstF5I GGATG 8 cut(s) 171, 514, 1084, 1311, 1339, 1645, 1837, 2466
BstMAI GTCTC 5 cut(s) 413, 1459, 1526, 1691, 1913
BstMWI GCNNNNNNNGC 4 cut(s) 188, 635, 973, 989
BstNI CCWGG 8 cut(s) 318, 503, 602, 973, 1076, 2131, 2286, 2444
BstNSI RCATGY 2 cut(s) 326, 1951
BstSCI CCNGG 9 cut(s) 316, 501, 600, 971, 1074, 1252, 2129, 2284, 2442
BstSFI CTRYAG 2 cut(s) 15, 2233
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 109, 112, 337, 963
BstV2I GAAGAC 2 cut(s) 585, 2409
BstX2I RGATCY 7 cut(s) 931, 1267, 1498, 1617, 1630, 1854, 1885
BstXI CCANNNNNNTGG 2 cut(s) 509, 1858
BstYI RGATCY 7 cut(s) 931, 1267, 1498, 1617, 1630, 1854, 1885
Bsu36I CCTNAGG 1 cut(s) 2211
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 8 cut(s) 457, 521, 886, 1188, 1802, 1815, 1914, 2284
BtsCI GGATG 8 cut(s) 171, 514, 1084, 1311, 1339, 1645, 1837, 2466
BtsI GCAGTG 2 cut(s) 345, 987
BtsIMutI CAGTG 9 cut(s) 345, 987, 1350, 1487, 1731, 2012, 2242, 2294, 2393
BveI ACCTGC 4 cut(s) 806, 832, 863, 2325
Cac8I GCNNGC 5 cut(s) 262, 803, 981, 985, 1774
CaiI CAGNNNCTG 1 cut(s) 1107
Cfr10I RCCGGY 2 cut(s) 785, 1592
Cfr13I GGNCC 8 cut(s) 771, 885, 1070, 1121, 1207, 1238, 1913, 1928
CseI GACGC 1 cut(s) 1517
Csp6I GTAC 8 cut(s) 292, 1063, 1286, 1722, 1762, 1966, 2289, 2299
CspAI ACCGGT 1 cut(s) 785
CviQI GTAC 8 cut(s) 292, 1063, 1286, 1722, 1762, 1966, 2289, 2299
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 2 cut(s) 116, 250
DriI GACNNNNNGTC 1 cut(s) 1926
DseDI GACNNNNNNGTC 2 cut(s) 116, 250
EaeI YGGCCR 2 cut(s) 1186, 1813
Eam1104I CTCTTC 5 cut(s) 15, 360, 510, 591, 950
Eam1105I GACNNNNNGTC 1 cut(s) 1926
EarI CTCTTC 5 cut(s) 15, 360, 510, 591, 950
Eco130I CCWWGG 3 cut(s) 438, 1359, 2168
Eco147I AGGCCT 3 cut(s) 457, 521, 2284
Eco31I GGTCTC 1 cut(s) 1526
Eco47I GGWCC 6 cut(s) 771, 1070, 1121, 1207, 1238, 1928
Eco57I CTGAAG 4 cut(s) 1479, 1619, 2055, 2352
Eco81I CCTNAGG 1 cut(s) 2211
Eco88I CYCGRG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 1070
EcoRII CCWGG 8 cut(s) 316, 501, 600, 971, 1074, 2129, 2284, 2442
EcoT14I CCWWGG 3 cut(s) 438, 1359, 2168
ErhI CCWWGG 3 cut(s) 438, 1359, 2168
FalI AAGNNNNNCTT 4 cut(s) 570, 602, 1776, 1808
FaqI GGGAC 4 cut(s) 1056, 1251, 1723, 1892
FauI CCCGC 1 cut(s) 2511
FbaI TGATCA 2 cut(s) 1081, 2398
FblI GTMKAC 2 cut(s) 606, 1944
Fnu4HI GCNGC 4 cut(s) 123, 126, 351, 977
FokI GGATG 8 cut(s) 178, 521, 1091, 1318, 1346, 1652, 1844, 2453
Fsp4HI GCNGC 4 cut(s) 123, 126, 351, 977
GluI GCNGC 4 cut(s) 123, 126, 351, 977
GsaI CCCAGC 3 cut(s) 758, 1203, 2001
GsuI CTGGAG 2 cut(s) 485, 1596
HaeIII GGCC 8 cut(s) 457, 521, 886, 1188, 1802, 1815, 1914, 2284
HapII CCGG 4 cut(s) 163, 786, 1254, 1593
HgaI GACGC 1 cut(s) 1517
HincII GTYRAC 5 cut(s) 216, 328, 465, 472, 1945
HindII GTYRAC 5 cut(s) 216, 328, 465, 472, 1945
HindIII AAGCTT 2 cut(s) 899, 1508
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 4 cut(s) 163, 786, 1254, 1593
Hpy188III TCNNGA 9 cut(s) 163, 1115, 1303, 1370, 1387, 1575, 1637, 2370, 2462
Hpy99I CGWCG 1 cut(s) 1946
HpyCH4IV ACGT 1 cut(s) 2262
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 635, 973, 989
HpySE526I ACGT 1 cut(s) 2262
KflI GGGWCCC 1 cut(s) 1070
Kpn2I TCCGGA 1 cut(s) 162
KpnI GGTACC 1 cut(s) 2292
Ksp22I TGATCA 2 cut(s) 1081, 2398
KspAI GTTAAC 1 cut(s) 472
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 4 cut(s) 432, 1655, 2178, 2491
Lsp1109I GCAGC 4 cut(s) 109, 112, 337, 963
LweI GCATC 4 cut(s) 1166, 1411, 2080, 2456
MaeII ACGT 1 cut(s) 2262
MaeIII GTNAC 3 cut(s) 343, 920, 1346
MflI RGATCY 7 cut(s) 931, 1267, 1498, 1617, 1630, 1854, 1885
MhlI GDGCHC 4 cut(s) 376, 429, 1584, 2221
MluCI AATT 7 cut(s) 207, 529, 1662, 1842, 1868, 2199, 2274
MlyI GAGTC 4 cut(s) 104, 260, 1580, 1979
MmeI TCCRAC 2 cut(s) 2147, 2409
MroI TCCGGA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 2274
MseI TTAA 5 cut(s) 210, 471, 665, 699, 1278
MslI CAYNNNNRTG 1 cut(s) 2088
MspA1I CMGCKG 1 cut(s) 2455
MspI CCGG 4 cut(s) 163, 786, 1254, 1593
MspR9I CCNGG 9 cut(s) 318, 503, 602, 973, 1076, 1254, 2131, 2286, 2444
Mva1269I GAATGC 2 cut(s) 556, 1396
MvaI CCWGG 8 cut(s) 318, 503, 602, 973, 1076, 2131, 2286, 2444
MwoI GCNNNNNNNGC 4 cut(s) 188, 635, 973, 989
NciI CCSGG 1 cut(s) 1254
NlaIV GGNNCC 8 cut(s) 1071, 1072, 1208, 1239, 2003, 2174, 2290, 2440
NmuCI GTSAC 2 cut(s) 343, 920
NspI RCATGY 2 cut(s) 326, 1951
NspV TTCGAA 1 cut(s) 2268
PasI CCCWGGG 1 cut(s) 317
PceI AGGCCT 3 cut(s) 457, 521, 2284
PciI ACATGT 1 cut(s) 1947
PciSI GCTCTTC 1 cut(s) 360
PctI GAATGC 2 cut(s) 556, 1396
PdmI GAANNNNTTC 1 cut(s) 2274
PfeI GAWTC 8 cut(s) 222, 311, 906, 1057, 1150, 1230, 1415, 2330
PflMI CCANNNNNTGG 1 cut(s) 768
PinAI ACCGGT 1 cut(s) 785
PkrI GCNGC 4 cut(s) 124, 127, 352, 978
PleI GAGTC 4 cut(s) 104, 259, 1579, 1979
PpsI GAGTC 4 cut(s) 104, 259, 1579, 1979
PpuMI RGGWCCY 1 cut(s) 1070
PscI ACATGT 1 cut(s) 1947
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 8 cut(s) 316, 501, 600, 971, 1074, 2129, 2284, 2442
PspFI CCCAGC 3 cut(s) 754, 1199, 1997
PspGI CCWGG 8 cut(s) 316, 501, 600, 971, 1074, 2129, 2284, 2442
PspN4I GGNNCC 8 cut(s) 1071, 1072, 1208, 1239, 2003, 2174, 2290, 2440
PspPI GGNCC 8 cut(s) 771, 885, 1070, 1121, 1207, 1238, 1913, 1928
PspPPI RGGWCCY 1 cut(s) 1070
PstI CTGCAG 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 1107
PsuI RGATCY 7 cut(s) 931, 1267, 1498, 1617, 1630, 1854, 1885
PvuII CAGCTG 1 cut(s) 2455
RsaI GTAC 8 cut(s) 293, 1064, 1287, 1723, 1763, 1967, 2290, 2300
RsaNI GTAC 8 cut(s) 292, 1063, 1286, 1722, 1762, 1966, 2289, 2299
RseI CAYNNNNRTG 1 cut(s) 2088
SalI GTCGAC 1 cut(s) 1943
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 5 cut(s) 210, 471, 665, 699, 1278
SatI GCNGC 4 cut(s) 123, 126, 351, 977
Sau96I GGNCC 8 cut(s) 771, 885, 1070, 1121, 1207, 1238, 1913, 1928
SchI GAGTC 4 cut(s) 104, 260, 1580, 1979
ScrFI CCNGG 9 cut(s) 318, 503, 602, 973, 1076, 1254, 2131, 2286, 2444
SduI GDGCHC 4 cut(s) 376, 429, 1584, 2221
SfaNI GCATC 4 cut(s) 1166, 1411, 2080, 2456
SfcI CTRYAG 2 cut(s) 15, 2233
SfuI TTCGAA 1 cut(s) 2268
SinI GGWCC 6 cut(s) 771, 1070, 1121, 1207, 1238, 1928
SmiMI CAYNNNNRTG 1 cut(s) 2088
SmlI CTYRAG 3 cut(s) 1523, 1613, 1706
SmoI CTYRAG 3 cut(s) 1523, 1613, 1706
Sse9I AATT 7 cut(s) 207, 529, 1662, 1842, 1868, 2199, 2274
SseBI AGGCCT 3 cut(s) 457, 521, 2284
SsiI CCGC 1 cut(s) 2504
StuI AGGCCT 3 cut(s) 457, 521, 2284
StyD4I CCNGG 9 cut(s) 316, 501, 600, 971, 1074, 1252, 2129, 2284, 2442
StyI CCWWGG 3 cut(s) 438, 1359, 2168
TaiI ACGT 1 cut(s) 2265
TaqI TCGA 3 cut(s) 84, 1944, 2268
TasI AATT 7 cut(s) 207, 529, 1662, 1842, 1868, 2199, 2274
TatI WGTACW 3 cut(s) 1285, 1761, 2298
TfiI GAWTC 8 cut(s) 222, 311, 906, 1057, 1150, 1230, 1415, 2330
Tru1I TTAA 5 cut(s) 210, 471, 665, 699, 1278
Tru9I TTAA 5 cut(s) 210, 471, 665, 699, 1278
TscAI CASTG 9 cut(s) 352, 994, 1357, 1487, 1731, 2012, 2242, 2301, 2393
TseFI GTSAC 2 cut(s) 343, 920
TseI GCWGC 4 cut(s) 122, 125, 350, 976
Tsp45I GTSAC 2 cut(s) 343, 920
TspGWI ACGGA 7 cut(s) 58, 185, 419, 1682, 1709, 2415, 2459
TspRI CASTG 9 cut(s) 352, 994, 1357, 1487, 1731, 2012, 2242, 2301, 2393
Van91I CCANNNNNTGG 1 cut(s) 768
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 6 cut(s) 771, 1070, 1121, 1207, 1238, 1928
XapI RAATTY 5 cut(s) 529, 1842, 1868, 2199, 2274
XceI RCATGY 2 cut(s) 326, 1951
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 606, 1944
XmnI GAANNNNTTC 1 cut(s) 2274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.