Rh4DG141700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000450
Physical Location & Seq
Forward (+)
28036041 .. 28037033
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG141700.1

Sequence Viewer

Length: 423 bp
ATGGCAAAGAAAGCAACAAGTCGCAAAACGGCAGTAAGCGGGACAGAAGACATTACTACATCGATCACTGATAATGAAAGACAACAGACCGTCATTGCAAAGAAATCAAAGAGTCGCAAAAGGTCACTAAGCACAGATAGTATTACACTTTCTAATGACAGTGAAGAGCAAGAAACTGAAGAGACAGGGTCTGAGTCTCAACCTTCAAATGCAACAGGTTCAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCCAGCTAATATACATGACGGAAGGATCATAACCCCTCAAGCAACACGTGCAATATTCCCACTCTTCAAGCAAGAGCTGACGGGAGCCATTTACAACATGGCCTCAATACAAAAAGCAAGGAAAGAACTTGAAAAGGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.03

Weight (kDa)

9.73

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 198
AcvI CACGTG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 3 cut(s) 207, 346, 410
AluBI AGCT 3 cut(s) 254, 284, 355
AluI AGCT 3 cut(s) 254, 284, 355
Alw26I GTCTC 2 cut(s) 176, 201
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 176, 201
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 62
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 183
BshFI GGCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 62
BslFI GGGAC 2 cut(s) 55, 282
BsmAI GTCTC 2 cut(s) 176, 201
BsmFI GGGAC 2 cut(s) 55, 282
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 2 cut(s) 63, 303
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 184
BspDI ATCGAT 1 cut(s) 62
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 93
BssMI GATC 2 cut(s) 63, 303
Bst4CI ACNGT 2 cut(s) 91, 161
Bst6I CTCTTC 3 cut(s) 159, 174, 347
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 278, 282
BstDEI CTNAG 4 cut(s) 128, 192, 231, 255
BstKTI GATC 2 cut(s) 66, 306
BstMAI GTCTC 2 cut(s) 176, 201
BstMBI GATC 2 cut(s) 63, 303
BstMWI GCNNNNNNNGC 2 cut(s) 11, 326
BstNSI RCATGY 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 62
BsuRI GGCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 66, 166
Cac8I GCNNGC 2 cut(s) 278, 282
CaiI CAGNNNCTG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 62
CviAII CATG 4 cut(s) 272, 277, 293, 376
CviJI RGCY 5 cut(s) 254, 284, 355, 365, 380
CviKI_1 RGCY 5 cut(s) 254, 284, 355, 365, 380
DdeI CTNAG 4 cut(s) 128, 192, 231, 255
DpnI GATC 2 cut(s) 65, 305
DpnII GATC 2 cut(s) 63, 303
Eam1104I CTCTTC 3 cut(s) 159, 174, 347
EarI CTCTTC 3 cut(s) 159, 174, 347
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 224
FaeI CATG 4 cut(s) 275, 280, 296, 379
FaiI YATR 7 cut(s) 273, 278, 290, 294, 308, 377, 421
FaqI GGGAC 2 cut(s) 55, 282
FatI CATG 4 cut(s) 271, 276, 292, 375
FauI CCCGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 380
Hin1II CATG 4 cut(s) 275, 280, 296, 379
HinfI GANTC 2 cut(s) 112, 194
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 213, 294
HpyCH4III ACNGT 2 cut(s) 91, 161
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 98, 212, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 326
HpyF3I CTNAG 4 cut(s) 128, 192, 231, 255
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 4 cut(s) 275, 280, 296, 379
Kzo9I GATC 2 cut(s) 63, 303
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 2 cut(s) 251, 362
LpnPI CCDG 4 cut(s) 171, 201, 207, 294
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 123
MalI GATC 2 cut(s) 65, 305
MboI GATC 2 cut(s) 63, 303
MboII GAAGA 5 cut(s) 59, 176, 191, 247, 334
MlyI GAGTC 2 cut(s) 121, 203
MnlI CCTC 4 cut(s) 237, 239, 324, 391
MwoI GCNNNNNNNGC 2 cut(s) 11, 326
NdeII GATC 2 cut(s) 63, 303
NlaIII CATG 4 cut(s) 275, 280, 296, 379
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 123
NspI RCATGY 1 cut(s) 280
PaeI GCATGC 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 187
PleI GAGTC 2 cut(s) 120, 202
PmaCI CACGTG 1 cut(s) 326
PmlI CACGTG 1 cut(s) 326
PpsI GAGTC 2 cut(s) 120, 202
Ppu21I YACGTR 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
PspCI CACGTG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 187
SapI GCTCTTC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 63, 303
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 2 cut(s) 121, 203
SetI ASST 9 cut(s) 125, 205, 220, 226, 244, 256, 286, 328, 357
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
SphI GCATGC 1 cut(s) 280
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 333
TaaI ACNGT 2 cut(s) 91, 161
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 62
TscAI CASTG 2 cut(s) 73, 166
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 73, 166
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.