Rh4CG188000

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000450
Physical Location & Seq
Reverse (-)
40622638 .. 40623002
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG188000.1

Sequence Viewer

Length: 312 bp
ATGGAACCCTTACAGACGTCGTTGAGCTCTGCTACCAAAGGCAAAGGTTATAAGGAAGATCATTATGACATACTAAGTGTCAACAATAAGGGTAAGTTGAATACCCAAGAGCCATTTGTGCTGGCATCCCAAGCAACCCAAGTTTATTTTGTTGAAGGAATAGAAAACAATGCTTGCAATGTCATGGTGGAAACCAAACCTAGAAACGTTTTTGAAATGCCTACTGATGAAGAGGAACCGTATCAAGAAGAAGAATCTCATACAAGTCACACATATGCAAACCGTAACGAGGAAGAAGATAATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

103

Amino Acids

11.8

Weight (kDa)

4.43

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 12 - 57 1e-11 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 51
AatII GACGTC 1 cut(s) 20
AclI AACGTT 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 3 cut(s) 100, 155, 215
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw21I GWGCWC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 29
BfaI CTAG 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 6, 237
BmsI GCATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 184
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 6, 237
BsrDI GCAATG 1 cut(s) 184
BssMI GATC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 240, 284
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 123, 175
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 118, 131
BtsCI GGATG 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 123, 175
CviAII CATG 1 cut(s) 184
CviJI RGCY 2 cut(s) 27, 112
CviKI_1 RGCY 2 cut(s) 27, 112
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 1 cut(s) 187
FaiI YATR 7 cut(s) 51, 66, 71, 185, 261, 274, 276
FatI CATG 1 cut(s) 183
FauNDI CATATG 1 cut(s) 274
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 29
FspBI CTAG 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 187
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 2 cut(s) 240, 284
HpyCH4IV ACGT 2 cut(s) 17, 207
HpyCH4V TGCA 2 cut(s) 177, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 131
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 2 cut(s) 17, 207
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 107
LweI GCATC 1 cut(s) 134
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 17, 207
MaeIII GTNAC 2 cut(s) 266, 284
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 6 cut(s) 68, 242, 260, 263, 305, 308
MhlI GDGCHC 1 cut(s) 29
MnlI CCTC 2 cut(s) 226, 283
MslI CAYNNNNRTG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 118, 131
NdeI CATATG 1 cut(s) 274
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 2 cut(s) 6, 237
NmuCI GTSAC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 254
PsiI TTATAA 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 6, 237
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 29
Sau3AI GATC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 29
SetI ASST 5 cut(s) 20, 29, 49, 202, 210
SfaNI GCATC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 273
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 29
TaaI ACNGT 2 cut(s) 240, 284
TaiI ACGT 2 cut(s) 20, 210
TfiI GAWTC 1 cut(s) 254
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 243
XspI CTAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.