FvH4_1g24191

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000450
Physical Location & Seq
Forward (+)
16070655 .. 16072230
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24191.t1

Sequence Viewer

Length: 966 bp
ATGAAGACTCATGATTGTCACGTTTTCTTAAAGAGACTACTTTCGCTTGTGGTGAGAGAGTTACTGGCTAAAGAACCATGTGAAGCTTTGATTGAGCTTTCTTACTTTTTCAAGGAATTGTGTGCTAAAAATCTGAATGTCTCTGATTTGGAACTTCTTGATAATCAAATTGCAACAACTCTATGCAAGTTGGAAATGATATTTCCTCCTGCATTTTTTACCATCATGGTACATTTGTCAATTCATTTGGCGCGGGAAGCAAAAGTAGCTGGTCTTGTACAGTATAGATGGATGTATCTTATTGAAAGGGAGCATAAGGATATTCTTCGTATACAATATGGTGATGATCAGGTGGATCAGTTGCACAAGAAAATTTTTGTGAAATGGTTTTCTGAAAGGATCGAGCAATTATATGCAGAAGGAAAAGAGAGTGCTCAAATGTTTTCTTTGGCCCAAGGTTCTGGAAAGCAAGCAGTCTACTATAAAGGTTACAATATCCATGGGTTCAGGTTCCATACAGAACAACATGATGAGAATAAGAAAACACAAAACAGTGGAGTTATGGTCAAAGGAGAGAAAGAGATTAATTGTGTGCCTTGGTATGGAACCATTACAGACATCGTTGAGCTTTGGTATATAGATCAGAATAAAGTTATATTGTTTCACTGTAATTGGTTTGACACGGCTACCAAAGGCAAAGGTTATAAAGAAGACCGTTATGGCATATTGAGTGTCAACAATAAGGGTAAGTTGAATACCCAAGAGCCATTTGTGCTAGCATCCCAAGCAACCCAAGTTTATTATGTTGAAGGAATAAAAAATAGTACTTGGAGCGTCGTGGTGGAAACCAAACCTAGAAATGTTTTTGAAATGCCTACTGATGAAGAGGAACCGTATCAACAAGAAGAATCTCAAACAAGTCACACGTATGCAAATCGTAATGTGGAAGAAGACGATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

322

Amino Acids

37.55

Weight (kDa)

5.55

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4218 PF13960 40 - 104 1.1e-27 Domain of unknown function (DUF4218)
DUF4216 PF13952 209 - 280 1.8e-24 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 705
AccI GTMKAC 2 cut(s) 331, 477
AccII CGCG 1 cut(s) 253
AciI CCGC 1 cut(s) 253
AclWI GGATC 2 cut(s) 363, 407
AcsI RAATTY 1 cut(s) 372
AfaI GTAC 3 cut(s) 231, 279, 826
AfiI CCNNNNNNNGG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 924
AgsI TTSAA 5 cut(s) 112, 305, 754, 809, 869
AluBI AGCT 4 cut(s) 86, 97, 269, 628
AluI AGCT 4 cut(s) 86, 97, 269, 628
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 28, 145
AlwI GGATC 2 cut(s) 363, 407
AoxI GGCC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 372
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 2 cut(s) 64, 353
AsuNHI GCTAGC 1 cut(s) 775
BaeI ACNNNNGTAYC 2 cut(s) 221, 254
BbsI GAAGAC 3 cut(s) 11, 717, 957
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 2 cut(s) 230, 282
BceAI ACGGC 1 cut(s) 699
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 28, 145
BfaI CTAG 2 cut(s) 776, 855
BmcAI AGTACT 1 cut(s) 826
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 3 cut(s) 512, 607, 891
BmsI GCATC 1 cut(s) 788
BmtI GCTAGC 1 cut(s) 779
BpiI GAAGAC 3 cut(s) 11, 717, 957
BsaAI YACGTR 1 cut(s) 927
BsaJI CCNNGG 3 cut(s) 454, 499, 596
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 3 cut(s) 454, 499, 596
BseGI GGATG 2 cut(s) 297, 779
BseLI CCNNNNNNNGG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 253
BshFI GGCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 2 cut(s) 28, 145
BsnI GGCC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 4 cut(s) 346, 355, 399, 640
Bsp19I CCATGG 1 cut(s) 499
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 452
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 512, 607, 891
BspOI GCTAGC 1 cut(s) 779
BspPI GGATC 2 cut(s) 363, 407
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 3 cut(s) 454, 499, 596
BssMI GATC 4 cut(s) 346, 355, 399, 640
BssNAI GTATAC 1 cut(s) 332
BssT1I CCWWGG 3 cut(s) 454, 499, 596
Bst1107I GTATAC 1 cut(s) 332
Bst4CI ACNGT 5 cut(s) 282, 554, 668, 716, 894
Bst6I CTCTTC 1 cut(s) 879
BstAUI TGTACA 1 cut(s) 277
BstBAI YACGTR 1 cut(s) 927
BstC8I GCNNGC 2 cut(s) 471, 777
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 2 cut(s) 297, 779
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 349, 358, 402, 643
BstMAI GTCTC 2 cut(s) 28, 145
BstMBI GATC 4 cut(s) 346, 355, 399, 640
BstMWI GCNNNNNNNGC 4 cut(s) 257, 266, 772, 785
BstUI CGCG 1 cut(s) 253
BstV2I GAAGAC 3 cut(s) 11, 717, 957
BstXI CCANNNNNNTGG 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 452
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 2 cut(s) 297, 779
BtsIMutI CAGTG 2 cut(s) 559, 664
Cac8I GCNNGC 2 cut(s) 471, 777
CciI TCATGA 1 cut(s) 10
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 1 cut(s) 823
Csp6I GTAC 3 cut(s) 230, 278, 825
CviAII CATG 5 cut(s) 11, 78, 226, 500, 527
CviJI RGCY 8 cut(s) 68, 86, 97, 269, 452, 628, 686, 766
CviKI_1 RGCY 8 cut(s) 68, 86, 97, 269, 452, 628, 686, 766
CviQI GTAC 3 cut(s) 230, 278, 825
DpnI GATC 4 cut(s) 348, 357, 401, 642
DpnII GATC 4 cut(s) 346, 355, 399, 640
Eam1104I CTCTTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 879
Eco130I CCWWGG 3 cut(s) 454, 499, 596
EcoT14I CCWWGG 3 cut(s) 454, 499, 596
ErhI CCWWGG 3 cut(s) 454, 499, 596
FaeI CATG 5 cut(s) 14, 81, 229, 503, 530
FatI CATG 5 cut(s) 10, 77, 225, 499, 526
FauI CCCGC 1 cut(s) 246
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 2 cut(s) 331, 477
FokI GGATG 2 cut(s) 304, 766
FspBI CTAG 2 cut(s) 776, 855
GlaI GCGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 452
HgaI GACGC 1 cut(s) 823
HhaI GCGC 1 cut(s) 253
Hin1II CATG 5 cut(s) 14, 81, 229, 503, 530
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 2 cut(s) 7, 908
HphI GGTGA 2 cut(s) 64, 353
Hpy166II GTNNAC 3 cut(s) 332, 478, 736
Hpy188I TCNGA 4 cut(s) 135, 145, 394, 645
Hpy188III TCNNGA 3 cut(s) 11, 158, 462
Hpy8I GTNNAC 3 cut(s) 332, 478, 736
Hpy99I CGWCG 1 cut(s) 839
HpyAV CCTTC 2 cut(s) 413, 803
HpyCH4III ACNGT 5 cut(s) 282, 554, 668, 716, 894
HpyCH4IV ACGT 2 cut(s) 21, 926
HpyCH4V TGCA 6 cut(s) 173, 186, 212, 364, 416, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 257, 266, 772, 785
HpySE526I ACGT 2 cut(s) 21, 926
Hsp92II CATG 5 cut(s) 14, 81, 229, 503, 530
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 4 cut(s) 346, 355, 399, 640
LmnI GCTCC 2 cut(s) 310, 831
LpnPI CCDG 6 cut(s) 50, 222, 255, 335, 447, 493
LweI GCATC 1 cut(s) 788
MaeI CTAG 2 cut(s) 776, 855
MaeII ACGT 2 cut(s) 21, 926
MaeIII GTNAC 4 cut(s) 17, 60, 488, 920
MalI GATC 4 cut(s) 348, 357, 401, 642
MboI GATC 4 cut(s) 346, 355, 399, 640
MboII GAAGA 7 cut(s) 16, 317, 722, 896, 917, 959, 962
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 7 cut(s) 116, 168, 240, 372, 407, 586, 670
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 2 cut(s) 216, 880
MseI TTAA 2 cut(s) 29, 585
MslI CAYNNNNRTG 1 cut(s) 927
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 257, 266, 772, 785
NcoI CCATGG 1 cut(s) 499
NdeII GATC 4 cut(s) 346, 355, 399, 640
NheI GCTAGC 1 cut(s) 775
NlaIII CATG 5 cut(s) 14, 81, 229, 503, 530
NlaIV GGNNCC 3 cut(s) 512, 607, 891
NmuCI GTSAC 2 cut(s) 17, 920
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 1 cut(s) 908
Ppu21I YACGTR 1 cut(s) 927
PshBI ATTAAT 1 cut(s) 585
PsiI TTATAA 1 cut(s) 705
PspN4I GGNNCC 3 cut(s) 512, 607, 891
PspPI GGNCC 1 cut(s) 451
RsaI GTAC 3 cut(s) 231, 279, 826
RsaNI GTAC 3 cut(s) 230, 278, 825
RseI CAYNNNNRTG 1 cut(s) 927
SaqAI TTAA 2 cut(s) 29, 585
Sau3AI GATC 4 cut(s) 346, 355, 399, 640
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 826
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 927
Sse9I AATT 7 cut(s) 116, 168, 240, 372, 407, 586, 670
SsiI CCGC 1 cut(s) 253
SspMI CTAG 2 cut(s) 776, 855
StyI CCWWGG 3 cut(s) 454, 499, 596
TaaI ACNGT 5 cut(s) 282, 554, 668, 716, 894
TaiI ACGT 2 cut(s) 24, 929
TaqI TCGA 1 cut(s) 402
TasI AATT 7 cut(s) 116, 168, 240, 372, 407, 586, 670
TatI WGTACW 2 cut(s) 277, 824
TfiI GAWTC 1 cut(s) 908
Tru1I TTAA 2 cut(s) 29, 585
Tru9I TTAA 2 cut(s) 29, 585
TscAI CASTG 2 cut(s) 559, 671
TseFI GTSAC 2 cut(s) 17, 920
Tsp45I GTSAC 2 cut(s) 17, 920
TspDTI ATGAA 3 cut(s) 17, 233, 897
TspRI CASTG 2 cut(s) 559, 671
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 372
XmiI GTMKAC 2 cut(s) 331, 477
XspI CTAG 2 cut(s) 776, 855
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.