Rw7G023020

Transposase family tnp2

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
27510374 .. 27512622
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023020.1

Sequence Viewer

Length: 1680 bp
ATGTGGACAATCAATGATTTTCCTGCATATGGTTACATGTCTGGTTGGAGTACACAGGGAAAATTGGCATGTCCATGTTGTGCATTAGAGACTTGTAGTCGTAGATTACAACATGGCTCAAAACAATGTTATATGAGGCACCGTCGATTTTTAGCACCAGATCATGAATGGCATAAACAACGGGAACCTTTTGATAATACAAGGGAAGAGAAATGTGCACCAAGAAGACAATCTGGTGAGGAAATTGTAGATGAACTTCAGGGTTTGAAGACAGTTGCACATGGAAAGAATAAGAAAACCCAAATTATCCCTAGATTTGGAACGACTCACAATTGGAAAAAGAGTAGTATATTTTTCCAATTGCCTTACTGGAAGACACTATTGTTGCGCCATAATTTGGATGTGATGCATATCGAAAAAAATATTTTCGATAACGTGGTTGGCACAATAATAAACATTGATGGTAAAACAAAAGATTCTTCAAATGCTCGTCTTGATCTCCAAGCTATGGATATAAGGAAAGCTTACTGGCCTAGAGAGGAGGATGGCAAACTAGTTTATGATCTGGCACCTTTTGAATTGTCAGCTGTTGATAACAAAGCTATATGTGAATGGTTACTGAACTTGAAAGTTCCTGATGGATATTGTGCAAATGTATCTCGTTGGATCAATGCTAAACGACTCAGTATTTCTGGCATGAAGAGTCACGATTGCCATGTTTTCTTAGAGAGACTACTTCCGCTTGTGGTGCGAGAGTTACTGCCCAAAAAATCTTGTGAAGCATTGATTGAGCTTTCTTACTTTTTTAGAGAATTGTGTGCTAAAGTACTGAAAATCTCAGATTTGGAACTTCTGGAAAATAAAATTGCCATAACTCTATGCAAGTTGGAAATGATATTTCCTCCTACATTTTTTGACATCATGGTTCATTTGTCAATTCACTTGGCATGGGAAGCAAAAGTATGTGGGTCTGTGCAGTATAGATGGATGTATCCCATTGAAAGGTACTTGCATAAGTTAAATACTTATGTTCATAATAAAGCCTGTCCAAAAGGTTCTATTGCCGAAGGTTATTTGGCAGAAGAAGAACATAAGGACATTCTTCGTATACAACATGGTGATGATCGGGTGGATGAGTTGCACAAAAAAAATTTTGTGGAATGGTTTTCTAAGAAGATCCAACAATTGTATGTAGATGGAAAAGTGAGTGCTCAAATGGGTTCTTTGGCCCAAAGTCCTGGAAAGCAAGCTGTCTACTACAAAGGTTACAATATCCATGGATTTCGGTTCCATACTATACAACATGACGTGACAAAGAAAACACAAAATAGCGGAGTTATGCTATGGTATACAGATCACAATAAAGTTGTCTTGTTTCACTGTAATTGGTTTGACACAGCTACCAAAGGAAAAGGTTATAAGGAAGATCGTTATGGCATACTAAGTGTCAACAATAATGGTAAGTTGAATACCCAAGAGCCATTTGTGTTGGCATCCCAAGCAACCCAGGTTTATTATGTTGAAGGAATAAAAAACAGTGCTTGGAGTGTCGTGGTGGAAACCAAACCCAGAAACGTTTTTGAAATGCCTACTGATGAAGATGAACCATATCAAGAAGAAGAATCTCAGACGAGTCACACATATGAAAACCGTAACAAGGAAGAAGATACTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

559

Amino Acids

65.14

Weight (kDa)

7.84

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_21 PF02992 1 - 87 3.1e-27 Transposase family tnp2
DUF4218 PF13960 272 - 363 1e-40 Domain of unknown function (DUF4218)
DUF4216 PF13952 448 - 518 5.4e-24 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1419
AccB1I GGYRCC 2 cut(s) 138, 568
AccB7I CCANNNNNTGG 2 cut(s) 397, 508
AccI GTMKAC 3 cut(s) 1108, 1254, 1349
AciI CCGC 2 cut(s) 740, 1332
AclI AACGTT 1 cut(s) 1575
AclWI GGATC 2 cut(s) 674, 1171
AcsI RAATTY 1 cut(s) 1150
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 3 cut(s) 52, 828, 1007
AfiI CCNNNNNNNGG 6 cut(s) 29, 317, 397, 508, 1002, 1657
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 8 cut(s) 268, 483, 578, 628, 1001, 1468, 1523, 1583
AhdI GACNNNNNGTC 1 cut(s) 96
AhlI ACTAGT 1 cut(s) 553
AjiI CACGTC 1 cut(s) 1309
AjnI CCWGG 2 cut(s) 1237, 1506
AluBI AGCT 7 cut(s) 506, 524, 587, 602, 793, 1250, 1400
AluI AGCT 7 cut(s) 506, 524, 587, 602, 793, 1250, 1400
Alw21I GWGCWC 2 cut(s) 220, 1213
Alw26I GTCTC 2 cut(s) 83, 724
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 2 cut(s) 674, 1171
AoxI GGCC 2 cut(s) 530, 1227
ApaLI GTGCAC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 1150
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 1228
AsuHPI GGTGA 2 cut(s) 248, 1130
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 2 cut(s) 138, 568
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BbsI GAAGAC 3 cut(s) 232, 275, 380
Bbv12I GWGCWC 2 cut(s) 220, 1213
BccI CCATC 5 cut(s) 455, 539, 632, 978, 1190
BciT130I CCWGG 2 cut(s) 1239, 1508
BciVI GTATCC 1 cut(s) 1002
BcoDI GTCTC 2 cut(s) 83, 724
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 3 cut(s) 312, 534, 554
BfuI GTATCC 1 cut(s) 1002
BmcAI AGTACT 1 cut(s) 828
Bme1390I CCNGG 2 cut(s) 1239, 1508
BmeRI GACNNNNNGTC 1 cut(s) 96
BmgBI CACGTC 1 cut(s) 1309
BmgT120I GGNCC 1 cut(s) 1228
BmiI GGNNCC 4 cut(s) 140, 186, 570, 1289
BmrFI CCNGG 2 cut(s) 1239, 1508
BmsI GCATC 2 cut(s) 396, 1502
BpiI GAAGAC 3 cut(s) 232, 275, 380
BsaBI GATNNNNATC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 1276, 1506
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 317, 397, 508, 1002, 1657
Bse1I ACTGG 2 cut(s) 374, 533
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 2 cut(s) 1239, 1508
BseDI CCNNGG 2 cut(s) 1276, 1506
BseGI GGATG 5 cut(s) 406, 550, 993, 1138, 1493
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 6 cut(s) 29, 317, 397, 508, 1002, 1657
BseMII CTCAG 3 cut(s) 697, 852, 1640
BseNI ACTGG 2 cut(s) 374, 533
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 995
BshFI GGCC 2 cut(s) 532, 1229
BshNI GGYRCC 2 cut(s) 138, 568
BsiHKAI GWGCWC 2 cut(s) 220, 1213
BslI CCNNNNNNNGG 6 cut(s) 29, 317, 397, 508, 1002, 1657
BsmAI GTCTC 2 cut(s) 83, 724
BsnI GGCC 2 cut(s) 532, 1229
Bsp1286I GDGCHC 2 cut(s) 220, 1213
Bsp143I GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
Bsp19I CCATGG 1 cut(s) 1276
BspACI CCGC 2 cut(s) 740, 1332
BspANI GGCC 2 cut(s) 532, 1229
BspCNI CTCAG 3 cut(s) 696, 851, 1639
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 140, 186, 570, 1289
BspPI GGATC 2 cut(s) 674, 1171
BspT107I GGYRCC 2 cut(s) 138, 568
BsrI ACTGG 2 cut(s) 374, 533
BssECI CCNNGG 2 cut(s) 1276, 1506
BssMI GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
BssNAI GTATAC 2 cut(s) 1109, 1350
BssT1I CCWWGG 1 cut(s) 1276
Bst1107I GTATAC 2 cut(s) 1109, 1350
Bst2UI CCWGG 2 cut(s) 1239, 1508
Bst4CI ACNGT 5 cut(s) 143, 274, 1382, 1538, 1652
Bst6I CTCTTC 2 cut(s) 201, 695
BstC8I GCNNGC 1 cut(s) 1248
BstDEI CTNAG 6 cut(s) 683, 724, 838, 1170, 1442, 1626
BstDSI CCRYGG 1 cut(s) 1276
BstF5I GGATG 5 cut(s) 406, 550, 993, 1138, 1493
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 8 cut(s) 163, 499, 565, 669, 1126, 1179, 1357, 1429
BstMAI GTCTC 2 cut(s) 83, 724
BstMBI GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
BstMWI GCNNNNNNNGC 3 cut(s) 748, 953, 1499
BstNI CCWGG 2 cut(s) 1239, 1508
BstNSI RCATGY 2 cut(s) 40, 72
BstSCI CCNGG 2 cut(s) 1237, 1506
BstSLI GKGCMC 1 cut(s) 220
BstV2I GAAGAC 3 cut(s) 232, 275, 380
BstX2I RGATCY 1 cut(s) 1176
BstXI CCANNNNNNTGG 1 cut(s) 1238
BstYI RGATCY 1 cut(s) 1176
BstZ17I GTATAC 2 cut(s) 1109, 1350
BsuI GTATCC 1 cut(s) 1002
BsuRI GGCC 2 cut(s) 532, 1229
BtgI CCRYGG 1 cut(s) 1276
BtrI CACGTC 1 cut(s) 1309
BtsCI GGATG 5 cut(s) 406, 550, 993, 1138, 1493
BtsIMutI CAGTG 2 cut(s) 1378, 1543
Cac8I GCNNGC 1 cut(s) 1248
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 1228
Csp6I GTAC 3 cut(s) 51, 827, 1006
CviQI GTAC 3 cut(s) 51, 827, 1006
DdeI CTNAG 6 cut(s) 683, 724, 838, 1170, 1442, 1626
DpnI GATC 8 cut(s) 162, 498, 564, 668, 1125, 1178, 1356, 1428
DpnII GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
DriI GACNNNNNGTC 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 201, 695
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 2 cut(s) 201, 695
Eco130I CCWWGG 1 cut(s) 1276
Eco57I CTGAAG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 1237, 1506
EcoT14I CCWWGG 1 cut(s) 1276
EcoT22I ATGCAT 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 1276
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FauNDI CATATG 2 cut(s) 28, 1642
FblI GTMKAC 3 cut(s) 1108, 1254, 1349
FokI GGATG 5 cut(s) 413, 557, 1000, 1145, 1480
FspBI CTAG 3 cut(s) 312, 534, 554
GlaI GCGC 1 cut(s) 389
HaeIII GGCC 2 cut(s) 532, 1229
HhaI GCGC 1 cut(s) 390
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 1450
HindII GTYRAC 1 cut(s) 1450
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 6 cut(s) 325, 476, 681, 703, 1622, 1633
HphI GGTGA 2 cut(s) 248, 1130
Hpy166II GTNNAC 7 cut(s) 6, 53, 218, 1109, 1255, 1350, 1450
Hpy188I TCNGA 2 cut(s) 841, 1629
Hpy188III TCNNGA 6 cut(s) 164, 494, 635, 707, 854, 1613
Hpy8I GTNNAC 7 cut(s) 6, 53, 218, 1109, 1255, 1350, 1450
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 1061, 1517
HpyCH4III ACNGT 5 cut(s) 143, 274, 1382, 1538, 1652
HpyCH4IV ACGT 3 cut(s) 435, 1308, 1575
HpyF10VI GCNNNNNNNGC 3 cut(s) 748, 953, 1499
HpyF3I CTNAG 6 cut(s) 683, 724, 838, 1170, 1442, 1626
HpySE526I ACGT 3 cut(s) 435, 1308, 1575
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
LweI GCATC 2 cut(s) 396, 1502
MaeI CTAG 3 cut(s) 312, 534, 554
MaeII ACGT 3 cut(s) 435, 1308, 1575
MaeIII GTNAC 8 cut(s) 32, 615, 704, 756, 1265, 1309, 1634, 1652
MalI GATC 8 cut(s) 162, 498, 564, 668, 1125, 1178, 1356, 1428
MboI GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
MfeI CAATTG 3 cut(s) 331, 359, 1184
MflI RGATCY 1 cut(s) 1176
MhlI GDGCHC 2 cut(s) 220, 1213
MlyI GAGTC 4 cut(s) 319, 675, 712, 1642
MmeI TCCRAC 4 cut(s) 26, 644, 867, 1204
MnlI CCTC 5 cut(s) 129, 232, 532, 535, 912
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 1 cut(s) 1019
MslI CAYNNNNRTG 3 cut(s) 73, 1119, 1641
MspA1I CMGCKG 1 cut(s) 587
MspR9I CCNGG 2 cut(s) 1239, 1508
MunI CAATTG 3 cut(s) 331, 359, 1184
MvaI CCWGG 2 cut(s) 1239, 1508
MwoI GCNNNNNNNGC 3 cut(s) 748, 953, 1499
NcoI CCATGG 1 cut(s) 1276
NdeI CATATG 2 cut(s) 28, 1642
NdeII GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
NlaIV GGNNCC 4 cut(s) 140, 186, 570, 1289
NmuCI GTSAC 3 cut(s) 704, 1309, 1634
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 2 cut(s) 40, 72
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 2 cut(s) 476, 1622
PflMI CCANNNNNTGG 2 cut(s) 397, 508
PfoI TCCNGGA 1 cut(s) 1237
PleI GAGTC 4 cut(s) 319, 675, 711, 1641
PpsI GAGTC 4 cut(s) 319, 675, 711, 1641
PscI ACATGT 1 cut(s) 36
PsiI TTATAA 1 cut(s) 1419
Psp1406I AACGTT 1 cut(s) 1575
Psp6I CCWGG 2 cut(s) 1237, 1506
PspGI CCWGG 2 cut(s) 1237, 1506
PspN4I GGNNCC 4 cut(s) 140, 186, 570, 1289
PspPI GGNCC 1 cut(s) 1228
PsuI RGATCY 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 3 cut(s) 52, 828, 1007
RsaNI GTAC 3 cut(s) 51, 827, 1006
RseI CAYNNNNRTG 3 cut(s) 73, 1119, 1641
SaqAI TTAA 1 cut(s) 1019
Sau3AI GATC 8 cut(s) 160, 496, 562, 666, 1123, 1176, 1354, 1426
Sau96I GGNCC 1 cut(s) 1228
ScaI AGTACT 1 cut(s) 828
SchI GAGTC 4 cut(s) 319, 675, 712, 1642
ScrFI CCNGG 2 cut(s) 1239, 1508
SduI GDGCHC 2 cut(s) 220, 1213
SfaNI GCATC 2 cut(s) 396, 1502
SmiMI CAYNNNNRTG 3 cut(s) 73, 1119, 1641
SpeI ACTAGT 1 cut(s) 553
SsiI CCGC 2 cut(s) 740, 1332
SspI AATATT 1 cut(s) 424
SspMI CTAG 3 cut(s) 312, 534, 554
StyD4I CCNGG 2 cut(s) 1237, 1506
StyI CCWWGG 1 cut(s) 1276
TaaI ACNGT 5 cut(s) 143, 274, 1382, 1538, 1652
TaiI ACGT 3 cut(s) 438, 1311, 1578
TaqI TCGA 3 cut(s) 145, 414, 429
TatI WGTACW 2 cut(s) 50, 826
TfiI GAWTC 2 cut(s) 476, 1622
Tru1I TTAA 1 cut(s) 1019
Tru9I TTAA 1 cut(s) 1019
TscAI CASTG 2 cut(s) 1385, 1543
TseFI GTSAC 3 cut(s) 704, 1309, 1634
Tsp45I GTSAC 3 cut(s) 704, 1309, 1634
TspDTI ATGAA 8 cut(s) 180, 267, 713, 917, 1022, 1611, 1617, 1659
TspRI CASTG 2 cut(s) 1385, 1543
Van91I CCANNNNNTGG 2 cut(s) 397, 508
VneI GTGCAC 1 cut(s) 216
XapI RAATTY 1 cut(s) 1150
XceI RCATGY 2 cut(s) 40, 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XmiI GTMKAC 3 cut(s) 1108, 1254, 1349
XspI CTAG 3 cut(s) 312, 534, 554
ZrmI AGTACT 1 cut(s) 828
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.