Rorug05G0224200

Calcineurin subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
23267225 .. 23271265
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0224200.1

Sequence Viewer

Length: 774 bp
ATGAAAAAGAAAGCTACGCAGTTTCAACTGAACCCCAACTGGGCTCGATTCCAAGAAGCGCTCAAGAGCCAGCCAAAGCCTTCCAGACCCTTCAACAACTCTGACTCTAAAACCCCAAAAACCATCTTAGGGAAACGGAAAGAGAGAGTGGATGATTCTCCGTCTCTGTTGAATGTTCTAGAACCTGTTAATGATGATTGCAGTGTGACAGATGAAATAGCCATGGATTGTGAAATGGTCGGTGTCGGTCTAGGAAATAAAAGTGCCCTTGGACGAGTTACACTGATAAATAAATGGGGGAACGTTATATATGACGAGTTTGTTCGCCCAGTAGAACGTGTTGTTGATTTCCGAACTCAAATAAGTGGCATTCGTTCCTGGGACTTGCGAAAAGCAAAGGATTTTCGGATAGTTCAGAAAAGAGTGGCAGAGCTGATTAAAGGACGAATTCTTGTGGGCCATGCATTACGCAATGATCTGAAGGCGTTACTTCTGAGTCACCCCAAGGAAGACTTGAGAGATACTTCCGTATATCAACCCTTTAAGAGGGAGGAAGGATCCGTAAGGGCGCTCCGGCATCTTGCAGCTGAGTTTCTTGGTGTTGAAATCCAAAATGGGGAGCACTGCCCTGTAGAAGATGCCCGTGCTGCGATGCTGCTTTATCAGAAAAACAGACAAGTGTGGGAAAAGAACGTTAAACTTCAACTTAGGCTTAAAGAGAAGCAGAAGAAACGCGGCAAGGGGAAAAAGAAGCGGAAGGAGGGGGATTCCTGA

Protein Analysis

257

Amino Acids

29.51

Weight (kDa)

9.93

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_T PF00929 73 - 221 3.3e-11 Exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 735
AciI CCGC 2 cut(s) 735, 754
AclI AACGTT 2 cut(s) 303, 693
AclWI GGATC 2 cut(s) 552, 565
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 500
AfeI AGCGCT 1 cut(s) 60
AfiI CCNNNNNNNGG 4 cut(s) 40, 129, 546, 616
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 5 cut(s) 26, 94, 172, 605, 704
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 3 cut(s) 14, 433, 587
AluI AGCT 3 cut(s) 14, 433, 587
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 552, 565
Aor51HI AGCGCT 1 cut(s) 60
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 584, 647, 655
ApoI RAATTY 1 cut(s) 447
AspLEI GCGC 2 cut(s) 61, 571
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BamHI GGATCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 3 cut(s) 596, 634, 642
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 2 cut(s) 179, 251
BfmI CTRYAG 1 cut(s) 630
BfoI RGCGCY 2 cut(s) 62, 572
BisI GCNGC 4 cut(s) 585, 648, 656, 736
BlsI GCNGC 4 cut(s) 586, 649, 657, 737
Bme1390I CCNGG 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 559
BmrFI CCNGG 1 cut(s) 379
BmrI ACTGGG 2 cut(s) 49, 323
BmsI GCATC 3 cut(s) 586, 628, 642
BmuI ACTGGG 2 cut(s) 49, 323
BpiI GAAGAC 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 47, 535
BsaJI CCNNGG 4 cut(s) 222, 268, 378, 504
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 129, 546, 616
Bse1I ACTGG 2 cut(s) 44, 329
Bse3DI GCAATG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 222, 268, 378, 504
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 4 cut(s) 40, 129, 546, 616
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 2 cut(s) 485, 579
BseNI ACTGG 2 cut(s) 44, 329
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 596, 634, 642
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 4 cut(s) 40, 129, 546, 616
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 3 cut(s) 46, 268, 624
Bsp143I GATC 2 cut(s) 475, 557
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 735, 754
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 2 cut(s) 486, 580
BspFNI CGCG 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 559
BspPI GGATC 2 cut(s) 552, 565
BsrDI GCAATG 1 cut(s) 478
BsrI ACTGG 2 cut(s) 44, 329
BssECI CCNNGG 4 cut(s) 222, 268, 378, 504
BssMI GATC 2 cut(s) 475, 557
BssT1I CCWWGG 3 cut(s) 222, 268, 504
Bst2UI CCWGG 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 4 cut(s) 127, 494, 588, 707
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 544
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 735
BstH2I RGCGCY 2 cut(s) 62, 572
BstHHI GCGC 2 cut(s) 61, 571
BstKTI GATC 2 cut(s) 478, 560
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 475, 557
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 630
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 1 cut(s) 735
BstV1I GCAGC 3 cut(s) 596, 634, 642
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 2 cut(s) 208, 622
BtsIMutI CAGTG 3 cut(s) 208, 281, 622
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 61, 571
Cfr13I GGNCC 1 cut(s) 457
CviAII CATG 2 cut(s) 223, 461
DdeI CTNAG 4 cut(s) 127, 494, 588, 707
DpnI GATC 2 cut(s) 477, 559
DpnII GATC 2 cut(s) 475, 557
Eco130I CCWWGG 3 cut(s) 222, 268, 504
Eco24I GRGCYC 1 cut(s) 46
Eco47III AGCGCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 500
EcoNI CCTNNNNNAGG 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 3 cut(s) 222, 268, 504
EcoT22I ATGCAT 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 3 cut(s) 222, 268, 504
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 2 cut(s) 226, 464
FaiI YATR 6 cut(s) 224, 308, 310, 312, 462, 532
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 222, 460
Fnu4HI GCNGC 4 cut(s) 585, 648, 656, 736
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 4 cut(s) 585, 648, 656, 736
FspBI CTAG 2 cut(s) 179, 251
GlaI GCGC 2 cut(s) 60, 570
GluI GCNGC 4 cut(s) 585, 648, 656, 736
HaeII RGCGCY 2 cut(s) 62, 572
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 574
HhaI GCGC 2 cut(s) 61, 571
Hin1II CATG 2 cut(s) 226, 464
Hin6I GCGC 2 cut(s) 59, 569
HinP1I GCGC 2 cut(s) 59, 569
HinfI GANTC 5 cut(s) 48, 104, 155, 496, 767
HpaII CCGG 1 cut(s) 574
HphI GGTGA 1 cut(s) 491
Hpy188I TCNGA 7 cut(s) 103, 353, 408, 417, 480, 495, 666
Hpy188III TCNNGA 4 cut(s) 64, 84, 179, 771
HpyAV CCTTC 5 cut(s) 90, 100, 475, 548, 751
HpyCH4IV ACGT 3 cut(s) 303, 337, 693
HpyCH4V TGCA 3 cut(s) 201, 464, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 4 cut(s) 127, 494, 588, 707
HpySE526I ACGT 3 cut(s) 303, 337, 693
Hsp92II CATG 2 cut(s) 226, 464
HspAI GCGC 2 cut(s) 59, 569
Kzo9I GATC 2 cut(s) 475, 557
LmnI GCTCC 2 cut(s) 576, 619
LpnPI CCDG 9 cut(s) 25, 83, 97, 198, 342, 364, 391, 587, 642
Lsp1109I GCAGC 3 cut(s) 596, 634, 642
LweI GCATC 3 cut(s) 586, 628, 642
MaeI CTAG 2 cut(s) 179, 251
MaeII ACGT 3 cut(s) 303, 337, 693
MaeIII GTNAC 4 cut(s) 205, 277, 486, 497
MalI GATC 2 cut(s) 477, 559
MboI GATC 2 cut(s) 475, 557
MboII GAAGA 3 cut(s) 521, 647, 739
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 3 cut(s) 46, 268, 624
MluCI AATT 1 cut(s) 447
MlyI GAGTC 2 cut(s) 98, 505
MnlI CCTC 3 cut(s) 540, 544, 754
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 5 cut(s) 189, 438, 543, 696, 714
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 574
MspR9I CCNGG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 735
MwoI GCNNNNNNNGC 1 cut(s) 647
NcoI CCATGG 1 cut(s) 222
NdeII GATC 2 cut(s) 475, 557
NlaIII CATG 2 cut(s) 226, 464
NlaIV GGNNCC 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 205, 497
NsiI ATGCAT 1 cut(s) 466
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 3 cut(s) 48, 155, 767
PkrI GCNGC 4 cut(s) 586, 649, 657, 737
PleI GAGTC 2 cut(s) 98, 504
PpsI GAGTC 2 cut(s) 98, 504
Psp1406I AACGTT 2 cut(s) 303, 693
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 587
SaqAI TTAA 5 cut(s) 189, 438, 543, 696, 714
SatI GCNGC 4 cut(s) 585, 648, 656, 736
Sau3AI GATC 2 cut(s) 475, 557
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 2 cut(s) 98, 505
ScrFI CCNGG 1 cut(s) 379
SduI GDGCHC 3 cut(s) 46, 268, 624
SetI ASST 7 cut(s) 16, 187, 306, 340, 435, 589, 696
SfaNI GCATC 3 cut(s) 586, 628, 642
SfcI CTRYAG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 62, 514
SmoI CTYRAG 2 cut(s) 62, 514
Sse9I AATT 1 cut(s) 447
SsiI CCGC 2 cut(s) 735, 754
SspMI CTAG 2 cut(s) 179, 251
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 3 cut(s) 222, 268, 504
TaiI ACGT 3 cut(s) 306, 340, 696
TaqI TCGA 1 cut(s) 46
TaqII GACCGA 1 cut(s) 236
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 3 cut(s) 48, 155, 767
Tru1I TTAA 5 cut(s) 189, 438, 543, 696, 714
Tru9I TTAA 5 cut(s) 189, 438, 543, 696, 714
TscAI CASTG 3 cut(s) 208, 288, 629
TseFI GTSAC 2 cut(s) 205, 497
TseI GCWGC 3 cut(s) 584, 647, 655
Tsp45I GTSAC 2 cut(s) 205, 497
TspDTI ATGAA 2 cut(s) 17, 228
TspGWI ACGGA 4 cut(s) 150, 151, 517, 550
TspRI CASTG 3 cut(s) 208, 288, 629
XagI CCTNNNNNAGG 1 cut(s) 544
XapI RAATTY 1 cut(s) 447
XbaI TCTAGA 1 cut(s) 178
XspI CTAG 2 cut(s) 179, 251
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.