Rh5DG275100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000450
Physical Location & Seq
Forward (+)
33655815 .. 33656733
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG275100.1

Sequence Viewer

Length: 606 bp
ATGCTAGTGAAACACAAGAGATTGGATTTTTCTATTTGTAATACATATCTAGTCATTGCAAAGAAACCAAAGAGTCGCAAAAGACCATTAAGCACAGATAGTATTACACCTTCTAATGACAGTGAAGAGCAAGAAACTGAAGAGACAGGGTCTGAGTCACAACCTTCCAATGCAACAGGTTCAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCTAGCTGATATACATGACGGAAGGATCATAACCCCTCAAGCAACACGTGCAATATTCCCACTCTTCAAGCAAGAGCTGACAGAGCCATTTACAACATGGCCTCAATACAAAAAGCAAGGAAAGAACTTGAAAAGGGTGTATGAACGTTGGCAAGAATGTATCTTCAAATTCACATGCTCTGAAGAAGATGTAAAGAATGCATTTGAAAAGCATATTGAAAATCGATATCCTGACTGGACGAGCGCAATAAGGAATAGCATTTTCATAAAGCATAAAACCGCTGCAGCTCGTTATGCTAATTGCCCAAAAGGAATAAAGCGAAATGTGTGGGCCCAATTGGTTGAAGAATGGTTGAAACCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.05

Weight (kDa)

9.5

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 519
AclI AACGTT 1 cut(s) 385
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 2 cut(s) 159, 441
AcvI CACGTG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 7 cut(s) 307, 370, 406, 446, 458, 584, 595
AluBI AGCT 4 cut(s) 215, 245, 316, 527
AluI AGCT 4 cut(s) 215, 245, 316, 527
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 2 cut(s) 338, 570
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 521, 524
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 3 cut(s) 185, 570, 571
AsuHPI GGTGA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 574
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbrPI CACGTG 1 cut(s) 287
BbvI GCAGC 2 cut(s) 508, 536
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 3 cut(s) 5, 50, 242
BfmI CTRYAG 1 cut(s) 522
BisI GCNGC 2 cut(s) 522, 525
BlsI GCNGC 2 cut(s) 523, 526
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 185, 570, 571
BmiI GGNNCC 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 463
BsaAI YACGTR 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 463
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 508, 536
BshFI GGCC 2 cut(s) 340, 572
BshVI ATCGAT 1 cut(s) 463
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 2 cut(s) 340, 572
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 1 cut(s) 519
BspANI GGCC 2 cut(s) 340, 572
BspCNI CTCAG 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 572
BspMAI CTGCAG 1 cut(s) 526
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 1 cut(s) 479
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 3 cut(s) 120, 135, 308
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 239, 243
BstDEI CTNAG 3 cut(s) 153, 192, 216
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 264
BstMWI GCNNNNNNNGC 3 cut(s) 287, 322, 533
BstNSI RCATGY 2 cut(s) 241, 417
BstSFI CTRYAG 1 cut(s) 522
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 508, 536
Bsu15I ATCGAT 1 cut(s) 463
BsuRI GGCC 2 cut(s) 340, 572
BsuTUI ATCGAT 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 239, 243
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 3 cut(s) 185, 570, 571
ClaI ATCGAT 1 cut(s) 463
CviAII CATG 5 cut(s) 233, 238, 254, 336, 414
CviJI RGCY 7 cut(s) 215, 245, 316, 325, 340, 527, 572
CviKI_1 RGCY 7 cut(s) 215, 245, 316, 325, 340, 527, 572
DdeI CTNAG 3 cut(s) 153, 192, 216
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
Eam1104I CTCTTC 3 cut(s) 120, 135, 308
EarI CTCTTC 3 cut(s) 120, 135, 308
Eco24I GRGCYC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 159, 441
Eco72I CACGTG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 185
EcoRV GATATC 1 cut(s) 467
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 574
FaeI CATG 5 cut(s) 236, 241, 257, 339, 417
FaqI GGGAC 1 cut(s) 243
FatI CATG 5 cut(s) 232, 237, 253, 335, 413
Fnu4HI GCNGC 2 cut(s) 522, 525
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 2 cut(s) 522, 525
FspBI CTAG 3 cut(s) 5, 50, 242
GlaI GCGC 1 cut(s) 484
GluI GCNGC 2 cut(s) 522, 525
HaeIII GGCC 2 cut(s) 340, 572
HhaI GCGC 1 cut(s) 485
Hin1II CATG 5 cut(s) 236, 241, 257, 339, 417
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 2 cut(s) 73, 155
HphI GGTGA 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 154, 421
Hpy188III TCNNGA 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 120, 174, 255
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 2 cut(s) 286, 385
HpyCH4V TGCA 5 cut(s) 59, 173, 290, 440, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 322, 533
HpyF3I CTNAG 3 cut(s) 153, 192, 216
HpySE526I ACGT 2 cut(s) 286, 385
Hsp92II CATG 5 cut(s) 236, 241, 257, 339, 417
HspAI GCGC 1 cut(s) 483
Kzo9I GATC 1 cut(s) 264
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 132, 162, 168, 460, 483
Lsp1109I GCAGC 2 cut(s) 508, 536
MaeI CTAG 3 cut(s) 5, 50, 242
MaeII ACGT 2 cut(s) 286, 385
MaeIII GTNAC 1 cut(s) 156
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MboII GAAGA 8 cut(s) 137, 152, 208, 295, 394, 434, 437, 596
MfeI CAATTG 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 3 cut(s) 407, 538, 575
MlyI GAGTC 2 cut(s) 82, 164
MnlI CCTC 4 cut(s) 198, 200, 285, 351
Mph1103I ATGCAT 1 cut(s) 442
MseI TTAA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 521
MunI CAATTG 1 cut(s) 575
Mva1269I GAATGC 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 287, 322, 533
NdeII GATC 1 cut(s) 264
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 5 cut(s) 236, 241, 257, 339, 417
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 2 cut(s) 241, 417
PaeI GCATGC 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 442
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 523, 526
PleI GAGTC 2 cut(s) 81, 163
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 2 cut(s) 81, 163
Ppu21I YACGTR 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 185
Psp1406I AACGTT 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 185
PspCI CACGTG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 572
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 185, 570, 571
PspPPI RGGWCCY 1 cut(s) 185
PstI CTGCAG 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 522, 525
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 3 cut(s) 185, 570, 571
SchI GAGTC 2 cut(s) 82, 164
SduI GDGCHC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SphI GCATGC 1 cut(s) 241
Sse9I AATT 3 cut(s) 407, 538, 575
SsiI CCGC 1 cut(s) 519
SspI AATATT 1 cut(s) 294
SspMI CTAG 3 cut(s) 5, 50, 242
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 2 cut(s) 289, 388
TaqI TCGA 1 cut(s) 463
TasI AATT 3 cut(s) 407, 538, 575
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 2 cut(s) 521, 524
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 2 cut(s) 396, 493
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 407
XceI RCATGY 2 cut(s) 241, 417
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XspI CTAG 3 cut(s) 5, 50, 242
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.