Rmu_sc0002206.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002206.1
OG0000450
Physical Location & Seq
Forward (+)
69371 .. 73012
3642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002206.1_g000017.1.cds

Sequence Viewer

Length: 756 bp
atggaagagagagaaatcataggagacttcgccggagccccgtcacctacagccggagtttccgtcaactttctccggattttggttaactttcgccggattcccgtcaccagccgcgggaatccggttaccggctgccgaccattggaatttggtgaaaatctcactggaaagaagactttgggtggtgatggagaagaagaattggatgattgggacatatacaaggaggtggtcggtgggtctaaacatgacaaaactcgtggcttaggtggcggaatggaaccacctgaagatgtgtgtggttcgagtagcagccaaacttgcagtaagcgctcgtgcttggaacgtgacaaggagtttggacaagtgaaacaacaagttgaaactcttacggatgtggtggccgatttgaaacaagcccttcaaactttaatggcaaatagttcaagtcattctcaatttgtgagagaatcaccatcttcgaaacgaaaatattcgactgaccagacccggaaccctgagatccgacccagcttttcaggccaactctggcgacctctaccgatgaaactctccagatcggtttgccaccttgctccggtcgtccctctggcatcctcttgcggcgattctcggtggtgggggcgatcaaaggcggcgaagtttgaggatttcgaacctgatcgtttctcctatctccgatgtcggcgaggcttcaaaccgagcttggagagctcagagcagcctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.85

Weight (kDa)

8.14

Isoelectric Point (pI)

68.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 5 cut(s) 115, 117, 276, 627, 659
AclWI GGATC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 312
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 53, 82, 117, 131, 145, 601
AgsI TTSAA 5 cut(s) 386, 415, 428, 450, 721
AluBI AGCT 3 cut(s) 537, 729, 738
AluI AGCT 3 cut(s) 537, 729, 738
Alw21I GWGCWC 1 cut(s) 740
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 2 cut(s) 405, 544
ApeKI GCWGC 3 cut(s) 135, 315, 745
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 1 cut(s) 336
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 5 cut(s) 36, 100, 167, 200, 468
AsuII TTCGAA 2 cut(s) 485, 678
BanII GRGCYC 2 cut(s) 40, 740
BauI CACGAG 2 cut(s) 261, 337
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 740
BbvI GCAGC 2 cut(s) 122, 327
BccI CCATC 2 cut(s) 185, 487
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 6 cut(s) 115, 136, 316, 628, 660, 746
BlsI GCNGC 6 cut(s) 116, 137, 317, 629, 661, 747
Bme1390I CCNGG 1 cut(s) 514
BmiI GGNNCC 3 cut(s) 37, 285, 518
BmrFI CCNGG 1 cut(s) 514
BmsI GCATC 1 cut(s) 626
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 562
Bpu10I CCTNAGC 1 cut(s) 268
Bpu14I TTCGAA 2 cut(s) 485, 678
BpuMI CCSGG 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 3 cut(s) 75, 124, 601
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 82, 117, 131, 145, 601
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 3 cut(s) 214, 403, 617
BseLI CCNNNNNNNGG 6 cut(s) 53, 82, 117, 131, 145, 601
BseMII CTCAG 2 cut(s) 513, 753
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 122, 327
BseYI CCCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 2 cut(s) 407, 546
BsiEI CGRYCG 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 8 cut(s) 33, 54, 76, 97, 125, 132, 514, 602
BslFI GGGAC 2 cut(s) 230, 593
BslI CCNNNNNNNGG 6 cut(s) 53, 82, 117, 131, 145, 601
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 230, 593
BsnI GGCC 2 cut(s) 407, 546
Bsp119I TTCGAA 2 cut(s) 485, 678
Bsp1286I GDGCHC 2 cut(s) 40, 740
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 4 cut(s) 525, 581, 650, 685
BspACI CCGC 5 cut(s) 115, 117, 276, 627, 659
BspANI GGCC 2 cut(s) 407, 546
BspCNI CTCAG 2 cut(s) 514, 752
BspEI TCCGGA 1 cut(s) 75
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 37, 285, 518
BspPI GGATC 1 cut(s) 520
BspT104I TTCGAA 2 cut(s) 485, 678
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 4 cut(s) 525, 581, 650, 685
BssSI CACGAG 2 cut(s) 261, 337
Bst2BI CACGAG 2 cut(s) 261, 337
BstBI TTCGAA 2 cut(s) 485, 678
BstDEI CTNAG 3 cut(s) 268, 522, 739
BstDSI CCRYGG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 214, 403, 617
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 4 cut(s) 528, 584, 653, 688
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 4 cut(s) 525, 581, 650, 685
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 5 cut(s) 273, 324, 333, 543, 735
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 48
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 122, 327
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
BsuRI GGCC 2 cut(s) 407, 546
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 214, 403, 617
BtsIMutI CAGTG 1 cut(s) 165
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 131
Cfr42I CCGCGG 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 1 cut(s) 251
DdeI CTNAG 3 cut(s) 268, 522, 739
DpnI GATC 4 cut(s) 527, 583, 652, 687
DpnII GATC 4 cut(s) 525, 581, 650, 685
EaeI YGGCCR 1 cut(s) 405
EciI GGCGGA 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 738
Eco24I GRGCYC 2 cut(s) 40, 740
Eco47III AGCGCT 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 738
EcoO65I GGTNACC 1 cut(s) 127
EcoT38I GRGCYC 2 cut(s) 40, 740
FaeI CATG 1 cut(s) 254
FaiI YATR 4 cut(s) 20, 221, 223, 252
FaqI GGGAC 2 cut(s) 230, 593
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 6 cut(s) 115, 136, 316, 628, 660, 746
FokI GGATG 3 cut(s) 221, 410, 604
FriOI GRGCYC 2 cut(s) 40, 740
Fsp4HI GCNGC 6 cut(s) 115, 136, 316, 628, 660, 746
GlaI GCGC 1 cut(s) 335
GluI GCNGC 6 cut(s) 115, 136, 316, 628, 660, 746
GsaI CCCAGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 562
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 407, 546
HapII CCGG 8 cut(s) 33, 54, 76, 97, 125, 132, 514, 602
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 2 cut(s) 67, 88
HindII GTYRAC 2 cut(s) 67, 88
HinfI GANTC 4 cut(s) 100, 121, 473, 632
HpaI GTTAAC 1 cut(s) 88
HpaII CCGG 8 cut(s) 33, 54, 76, 97, 125, 132, 514, 602
HphI GGTGA 5 cut(s) 36, 100, 167, 200, 468
Hpy166II GTNNAC 2 cut(s) 67, 88
Hpy188I TCNGA 3 cut(s) 530, 704, 742
Hpy188III TCNNGA 2 cut(s) 76, 579
Hpy8I GTNNAC 2 cut(s) 67, 88
HpyAV CCTTC 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 324, 333, 543, 735
HpyF3I CTNAG 3 cut(s) 268, 522, 739
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 75
KspAI GTTAAC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 118
Kzo9I GATC 4 cut(s) 525, 581, 650, 685
LmnI GCTCC 2 cut(s) 35, 604
Lsp1109I GCAGC 2 cut(s) 122, 327
LweI GCATC 1 cut(s) 626
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 4 cut(s) 42, 106, 127, 350
MalI GATC 4 cut(s) 527, 583, 652, 687
MboI GATC 4 cut(s) 525, 581, 650, 685
MboII GAAGA 6 cut(s) 17, 187, 209, 212, 305, 474
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 2 cut(s) 40, 740
MluCI AATT 3 cut(s) 149, 203, 461
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 6 cut(s) 223, 570, 621, 631, 664, 707
MroI TCCGGA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 2 cut(s) 87, 434
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 8 cut(s) 33, 54, 76, 97, 125, 132, 514, 602
MspR9I CCNGG 1 cut(s) 514
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 5 cut(s) 273, 324, 333, 543, 735
NciI CCSGG 1 cut(s) 514
NdeII GATC 4 cut(s) 525, 581, 650, 685
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 3 cut(s) 37, 285, 518
NmuCI GTSAC 3 cut(s) 42, 106, 350
NspV TTCGAA 2 cut(s) 485, 678
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 4 cut(s) 100, 121, 473, 632
PkrI GCNGC 6 cut(s) 116, 137, 317, 629, 661, 747
Psp124BI GAGCTC 1 cut(s) 740
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 533
PspN4I GGNNCC 3 cut(s) 37, 285, 518
PsuI RGATCY 1 cut(s) 525
SacI GAGCTC 1 cut(s) 740
SacII CCGCGG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 87, 434
SatI GCNGC 6 cut(s) 115, 136, 316, 628, 660, 746
Sau3AI GATC 4 cut(s) 525, 581, 650, 685
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 2 cut(s) 40, 740
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 48
Sfr303I CCGCGG 1 cut(s) 118
SfuI TTCGAA 2 cut(s) 485, 678
SgrBI CCGCGG 1 cut(s) 118
Sse9I AATT 3 cut(s) 149, 203, 461
SsiI CCGC 5 cut(s) 115, 117, 276, 627, 659
SspI AATATT 1 cut(s) 497
SstI GAGCTC 1 cut(s) 740
StyD4I CCNGG 1 cut(s) 512
TaiI ACGT 1 cut(s) 352
TaqI TCGA 4 cut(s) 308, 485, 500, 678
TasI AATT 3 cut(s) 149, 203, 461
TauI GCSGC 3 cut(s) 117, 630, 662
TfiI GAWTC 4 cut(s) 100, 121, 473, 632
Tru1I TTAA 2 cut(s) 87, 434
Tru9I TTAA 2 cut(s) 87, 434
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 3 cut(s) 42, 106, 350
TseI GCWGC 3 cut(s) 135, 315, 745
Tsp45I GTSAC 3 cut(s) 42, 106, 350
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 2 cut(s) 52, 410
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.