FvH4_6g23331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000450
Physical Location & Seq
Forward (+)
17342228 .. 17345030
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23331.t1

Sequence Viewer

Length: 795 bp
ATGCTTGATCGGAATGGAGTCGAACCTAGCCCAATAGAGTGTTGGAGAAAATTCTATGTAAGTAAAGCAGAAGACAGTAAAGAAGAACATTGGAAAAGTGAGAAGGCTAAGGAAATTTATGAGGATCTTATTGAGAGGAGGGATCAAATAGAAGATGTGTTTGGTGAAGTTGATGAAGTTGATGAAGTTGATGATTGGGAGATATATGAGAAAGTAATTCGTGAGCATAGTCATGGCCGTAGTCATGGCTGTGCACTTGGGTTAGATGCAGGGGCCAAACTCAAAGATATCAATTCACATAACCAAACTTGTAATAAGCCTGCATGTTTGGAAGCAAAAGAGAATTATGAGACAGTGAAAGGCGAAGTGGATACTCTGAAAGATAAATTGGAGAAATTGACTCAAGTTGTTCAAAATTTGCTGCCTTATAGCTCTGACAATTCTAAAAGTGTAAGAAACTCACATTATGTGGATAATATTATTGCAACGGATTCAAGTGCACTCCATGATGACGATGGTTTTTATGAAGATGGTATTGTTAGAGATGGTACGGATAGAGATGATGATACTTATGGAGATGGTGTTGATGATGAAGATGATGATATTGATGGATATGGTGCTGATGAAGATGGGACTGATGGAGATGGTGGTGATGAAGATGGTGTGAATGGTAATGCTAAGTTTCATGAGGTTGGTGTGAAGTATAGTCAGAGACACTCCGGCCTCCTAAAGCTAAACCACCACCCGGGAATAAAACGCGATCGGGACGACAACACCTTCGGCACCACCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.72

Weight (kDa)

4.46

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AccII CGCG 1 cut(s) 759
AclWI GGATC 2 cut(s) 132, 150
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 3 cut(s) 50, 114, 415
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 2 cut(s) 413, 495
AjuI GAANNNNNNNTTGG 4 cut(s) 144, 176, 371, 403
AluBI AGCT 2 cut(s) 432, 733
AluI AGCT 2 cut(s) 432, 733
Alw21I GWGCWC 2 cut(s) 256, 502
Alw26I GTCTC 2 cut(s) 344, 706
Alw44I GTGCAC 2 cut(s) 252, 498
AlwI GGATC 2 cut(s) 132, 150
Ama87I CYCGRG 1 cut(s) 745
AoxI GGCC 3 cut(s) 235, 273, 721
ApaLI GTGCAC 2 cut(s) 252, 498
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 3 cut(s) 50, 114, 415
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AspS9I GGNCC 1 cut(s) 273
AsuC2I CCSGG 2 cut(s) 746, 747
AsuHPI GGTGA 2 cut(s) 176, 662
AvaI CYCGRG 1 cut(s) 745
BaeGI GKGCMC 2 cut(s) 256, 502
BanI GGYRCC 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 2 cut(s) 256, 502
BbvI GCAGC 1 cut(s) 408
BccI CCATC 9 cut(s) 509, 524, 539, 572, 602, 623, 632, 638, 653
BceAI ACGGC 1 cut(s) 222
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 746, 747
BcoDI GTCTC 2 cut(s) 344, 706
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 2 cut(s) 746, 747
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 274, 784
BmrFI CCNGG 2 cut(s) 746, 747
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 746, 747
BsaJI CCNNGG 1 cut(s) 745
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 745
BseDI CCNNGG 1 cut(s) 745
BseLI CCNNNNNNNGG 1 cut(s) 745
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 2 cut(s) 256, 502
BseXI GCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 759
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 3 cut(s) 237, 275, 723
BshNI GGYRCC 1 cut(s) 782
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 2 cut(s) 256, 502
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 2 cut(s) 720, 746
BslFI GGGAC 2 cut(s) 646, 779
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 2 cut(s) 344, 706
BsmFI GGGAC 2 cut(s) 646, 779
BsnI GGCC 3 cut(s) 237, 275, 723
BsoBI CYCGRG 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 256, 502
Bsp143I GATC 4 cut(s) 7, 124, 142, 760
BspANI GGCC 3 cut(s) 237, 275, 723
BspFNI CGCG 1 cut(s) 759
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 2 cut(s) 274, 784
BspPI GGATC 2 cut(s) 132, 150
BspT107I GGYRCC 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 745
BssMI GATC 4 cut(s) 7, 124, 142, 760
Bst4CI ACNGT 2 cut(s) 77, 355
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 108, 678
BstFNI CGCG 1 cut(s) 759
BstKTI GATC 4 cut(s) 10, 127, 145, 763
BstMAI GTCTC 2 cut(s) 344, 706
BstMBI GATC 4 cut(s) 7, 124, 142, 760
BstMCI CGRYCG 1 cut(s) 763
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 744, 745
BstSLI GKGCMC 2 cut(s) 256, 502
BstUI CGCG 1 cut(s) 759
BstV1I GCAGC 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 3 cut(s) 237, 275, 723
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 321
CciI TCATGA 1 cut(s) 685
Cfr13I GGNCC 1 cut(s) 273
Cfr9I CCCGGG 1 cut(s) 745
Csp6I GTAC 1 cut(s) 549
CviAII CATG 5 cut(s) 233, 245, 324, 506, 686
CviJI RGCY 9 cut(s) 30, 107, 237, 249, 275, 319, 432, 723, 733
CviKI_1 RGCY 9 cut(s) 30, 107, 237, 249, 275, 319, 432, 723, 733
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 2 cut(s) 108, 678
DpnI GATC 4 cut(s) 9, 126, 144, 762
DpnII GATC 4 cut(s) 7, 124, 142, 760
EaeI YGGCCR 1 cut(s) 235
Eco32I GATATC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 745
EcoRV GATATC 1 cut(s) 289
FaeI CATG 5 cut(s) 236, 248, 327, 509, 689
FaqI GGGAC 2 cut(s) 646, 779
FatI CATG 5 cut(s) 232, 244, 323, 505, 685
Fnu4HI GCNGC 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 422
HaeIII GGCC 3 cut(s) 237, 275, 723
HapII CCGG 2 cut(s) 720, 746
Hin1II CATG 5 cut(s) 236, 248, 327, 509, 689
HinfI GANTC 3 cut(s) 18, 400, 491
HpaII CCGG 2 cut(s) 720, 746
HphI GGTGA 2 cut(s) 176, 662
Hpy166II GTNNAC 2 cut(s) 254, 500
Hpy188I TCNGA 4 cut(s) 12, 378, 436, 711
Hpy188III TCNNGA 3 cut(s) 221, 686, 764
Hpy8I GTNNAC 2 cut(s) 254, 500
HpyAV CCTTC 2 cut(s) 97, 787
HpyCH4III ACNGT 2 cut(s) 77, 355
HpyCH4V TGCA 5 cut(s) 254, 269, 323, 485, 500
HpyF3I CTNAG 2 cut(s) 108, 678
Hsp92II CATG 5 cut(s) 236, 248, 327, 509, 689
Kzo9I GATC 4 cut(s) 7, 124, 142, 760
LpnPI CCDG 4 cut(s) 255, 333, 733, 759
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 27
MalI GATC 4 cut(s) 9, 126, 144, 762
MboI GATC 4 cut(s) 7, 124, 142, 760
MboII GAAGA 7 cut(s) 83, 95, 164, 539, 605, 638, 668
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 256, 502
MluCI AATT 9 cut(s) 50, 114, 216, 292, 343, 386, 395, 415, 439
MlyI GAGTC 2 cut(s) 27, 394
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 5 cut(s) 115, 129, 132, 682, 734
MslI CAYNNNNRTG 2 cut(s) 231, 249
MspI CCGG 2 cut(s) 720, 746
MspR9I CCNGG 2 cut(s) 746, 747
MvnI CGCG 1 cut(s) 759
NciI CCSGG 2 cut(s) 746, 747
NdeII GATC 4 cut(s) 7, 124, 142, 760
NlaIII CATG 5 cut(s) 236, 248, 327, 509, 689
NlaIV GGNNCC 2 cut(s) 274, 784
NspI RCATGY 1 cut(s) 327
PagI TCATGA 1 cut(s) 685
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 1 cut(s) 423
Ple19I CGATCG 1 cut(s) 763
PleI GAGTC 2 cut(s) 26, 394
PpsI GAGTC 2 cut(s) 26, 394
PspN4I GGNNCC 2 cut(s) 274, 784
PspPI GGNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 124
PvuI CGATCG 1 cut(s) 763
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 2 cut(s) 231, 249
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 4 cut(s) 7, 124, 142, 760
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 2 cut(s) 27, 394
ScrFI CCNGG 2 cut(s) 746, 747
SduI GDGCHC 2 cut(s) 256, 502
SetI ASST 6 cut(s) 28, 434, 693, 735, 779, 794
SfaNI GCATC 1 cut(s) 256
SmaI CCCGGG 1 cut(s) 747
SmiMI CAYNNNNRTG 2 cut(s) 231, 249
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 9 cut(s) 50, 114, 216, 292, 343, 386, 395, 415, 439
SspI AATATT 1 cut(s) 478
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 744, 745
TaaI ACNGT 2 cut(s) 77, 355
TaqI TCGA 1 cut(s) 21
TasI AATT 9 cut(s) 50, 114, 216, 292, 343, 386, 395, 415, 439
TfiI GAWTC 1 cut(s) 491
TscAI CASTG 1 cut(s) 360
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 7 cut(s) 189, 198, 540, 606, 639, 669, 674
TspGWI ACGGA 2 cut(s) 503, 566
TspMI CCCGGG 1 cut(s) 745
TspRI CASTG 1 cut(s) 360
VneI GTGCAC 2 cut(s) 252, 498
XapI RAATTY 3 cut(s) 50, 114, 415
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 2 cut(s) 39, 512
XmaI CCCGGG 1 cut(s) 745
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.