Rroxscaffold_1G00052850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Forward (+)
73584892 .. 73587106
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052850.1

Sequence Viewer

Length: 192 bp
ATGGCAAAGCAAAAACTCAAAAGGGCATCAAGCTTCTCACGTCCTGAGTCATCTGGTCTCCCTTCAAACCAAAACCGTCACAACGGGTCATCGACTCACAACGAAACACAAGACATGGAAGAGATAGGTTCTGAGGCTCCACTATCAGAAGAACAAGGGAAATACCACAAAGAGTTCAGATGCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.11

Weight (kDa)

7.94

Isoelectric Point (pI)

84.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 66
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 2 cut(s) 35, 170
BsaBI GATNNNNATC 1 cut(s) 184
BsaI GGTCTC 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 184
BseMII CTCAG 2 cut(s) 36, 123
BsmAI GTCTC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 37, 124
BspHI TCATGA 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 45, 132
BstMAI GTCTC 1 cut(s) 62
BtrI CACGTC 1 cut(s) 41
CciI TCATGA 1 cut(s) 188
CviAII CATG 2 cut(s) 115, 189
CviJI RGCY 2 cut(s) 33, 137
CviKI_1 RGCY 2 cut(s) 33, 137
DdeI CTNAG 2 cut(s) 45, 132
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 118, 192
FaiI YATR 2 cut(s) 116, 190
FatI CATG 2 cut(s) 114, 188
Hin1II CATG 2 cut(s) 118, 192
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 2 cut(s) 47, 94
Hpy188I TCNGA 3 cut(s) 133, 148, 179
Hpy188III TCNNGA 2 cut(s) 44, 189
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 183
HpyF3I CTNAG 2 cut(s) 45, 132
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 2 cut(s) 118, 192
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 2 cut(s) 39, 57
LweI GCATC 2 cut(s) 35, 170
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 2 cut(s) 131, 161
MlyI GAGTC 2 cut(s) 56, 88
MnlI CCTC 1 cut(s) 127
NlaIII CATG 2 cut(s) 118, 192
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 77
PagI TCATGA 1 cut(s) 188
PleI GAGTC 2 cut(s) 55, 88
PpsI GAGTC 2 cut(s) 55, 88
PspN4I GGNNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 56, 88
SetI ASST 3 cut(s) 35, 43, 130
SfaNI GCATC 2 cut(s) 35, 170
SgeI CNNG 8 cut(s) 42, 51, 56, 66, 97, 122, 127, 167
TaaI ACNGT 1 cut(s) 77
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.