Rroxscaffold_1G00019590

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000450
Physical Location & Seq
Forward (+)
23937992 .. 23945534
7543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00019590.1

Sequence Viewer

Length: 972 bp
ATGGCAATAGGGTCCAAGGTCGACGTGGCGGTGGGTGTGCCTCCATTCCAGATCTGCTCGAAAACAAAAATTGAAAGAATTTGGCAGTTGGGCAATAGTACAAGAGGCTTGTTTCGATTGTATGATTGGTCTTGTTTAGGATTTGAGGTGATCATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACATTACATCTCGAGTCTTCCACACGTTCACAGTCTGAAGACATTCCCAATGAATCAACACATGGTGACAAAGAGAAGGAAGGGCAGGAAACTGAGGCTACCAAGAGGCAAGGTAGAGGCCCTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGTATCTTTGCGAAGTATTTGGCCCCTCTTCGGTCGAGCTGCAAGGGCCATACATAACATGGGCACAATTTCCGCATGAGGAATTGGATAGGTTGTTTGATCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCCGAGGAAGAACTGAAAGATGTATTCACGGAACACATCAACACTCGTTATAGTGACTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACAATCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTAAAGGAAATGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGATAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGATTGATAAGACTGGAGTTGAACCGAGTCCAATAGAGATGTTTAGAAGGTTTCATATTTCTAAGCCTAAAGATGGAAAACCGAAACATTGGCAGAGTGAGAAGGCAAAGGATCTTTATGAATCTATGGAATTGCAAAAACGTTTAGAGGAGACTTTGGGTGGTGATGGCGAAGATGAATTGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

323

Amino Acids

37.33

Weight (kDa)

6.3

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 214 - 304 2.8e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 703
AccI GTMKAC 1 cut(s) 21
AciI CCGC 4 cut(s) 29, 437, 586, 703
AclI AACGTT 1 cut(s) 922
AclWI GGATC 1 cut(s) 900
AcsI RAATTY 4 cut(s) 78, 481, 488, 567
AcuI CTGAAG 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 257
AfaI GTAC 2 cut(s) 100, 770
AfiI CCNNNNNNNGG 3 cut(s) 320, 394, 854
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 4 cut(s) 74, 487, 637, 803
AjiI CACGTC 1 cut(s) 25
AluBI AGCT 2 cut(s) 403, 608
AluI AGCT 2 cut(s) 403, 608
Alw26I GTCTC 1 cut(s) 926
AlwI GGATC 1 cut(s) 900
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 310, 385, 410
ApeKI GCWGC 4 cut(s) 185, 403, 602, 605
ApoI RAATTY 4 cut(s) 78, 481, 488, 567
AseI ATTAAT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 4 cut(s) 12, 311, 386, 410
AsuHPI GGTGA 3 cut(s) 160, 269, 956
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 201, 237
BbvI GCAGC 4 cut(s) 197, 390, 589, 617
BccI CCATC 2 cut(s) 848, 941
BceAI ACGGC 1 cut(s) 352
BclI TGATCA 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 926
BfmI CTRYAG 1 cut(s) 603
BglII AGATCT 1 cut(s) 51
BisI GCNGC 4 cut(s) 186, 404, 603, 606
BlsI GCNGC 4 cut(s) 187, 405, 604, 607
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 4 cut(s) 12, 311, 386, 410
BmiI GGNNCC 2 cut(s) 13, 388
BpiI GAAGAC 2 cut(s) 201, 237
BpmI CTGGAG 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 15, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 394, 854
Bse1I ACTGG 2 cut(s) 560, 799
BseDI CCNNGG 2 cut(s) 15, 501
BseGI GGATG 2 cut(s) 564, 970
BseLI CCNNNNNNNGG 3 cut(s) 320, 394, 854
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 560, 799
BseRI GAGGAG 2 cut(s) 794, 944
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 4 cut(s) 197, 390, 589, 617
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 312, 387, 412
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 3 cut(s) 320, 394, 854
BsmAI GTCTC 1 cut(s) 926
BsmI GAATGC 2 cut(s) 349, 712
BsnI GGCC 3 cut(s) 312, 387, 412
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 4 cut(s) 51, 150, 463, 892
BspACI CCGC 4 cut(s) 29, 437, 586, 703
BspANI GGCC 3 cut(s) 312, 387, 412
BspCNI CTCAG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 13, 388
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 1 cut(s) 900
BsrBI CCGCTC 1 cut(s) 703
BsrI ACTGG 2 cut(s) 560, 799
BssECI CCNNGG 2 cut(s) 15, 501
BssMI GATC 4 cut(s) 51, 150, 463, 892
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 2 cut(s) 397, 689
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 285, 843
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 564, 970
BstKTI GATC 4 cut(s) 54, 153, 466, 895
BstMAI GTCTC 1 cut(s) 926
BstMBI GATC 4 cut(s) 51, 150, 463, 892
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 2 cut(s) 409, 614
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 4 cut(s) 197, 390, 589, 617
BstV2I GAAGAC 2 cut(s) 201, 237
BstX2I RGATCY 2 cut(s) 51, 892
BstXI CCANNNNNNTGG 1 cut(s) 648
BstYI RGATCY 2 cut(s) 51, 892
BsuRI GGCC 3 cut(s) 312, 387, 412
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 564, 970
Cac8I GCNNGC 1 cut(s) 190
CciI TCATGA 1 cut(s) 153
Cfr13I GGNCC 4 cut(s) 12, 311, 386, 410
Csp6I GTAC 2 cut(s) 99, 769
CviAII CATG 5 cut(s) 154, 254, 340, 423, 440
CviQI GTAC 2 cut(s) 99, 769
DdeI CTNAG 2 cut(s) 285, 843
DpnI GATC 4 cut(s) 53, 152, 465, 894
DpnII GATC 4 cut(s) 51, 150, 463, 892
DraIII CACNNNGTG 1 cut(s) 257
Eam1104I CTCTTC 2 cut(s) 397, 689
EarI CTCTTC 2 cut(s) 397, 689
Eco130I CCWWGG 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 5 cut(s) 157, 257, 343, 426, 443
FatI CATG 5 cut(s) 153, 253, 339, 422, 439
FbaI TGATCA 1 cut(s) 150
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 186, 404, 603, 606
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 4 cut(s) 186, 404, 603, 606
GluI GCNGC 4 cut(s) 186, 404, 603, 606
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 3 cut(s) 312, 387, 412
Hin1II CATG 5 cut(s) 157, 257, 343, 426, 443
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 4 cut(s) 206, 245, 808, 902
HphI GGTGA 3 cut(s) 160, 269, 956
Hpy166II GTNNAC 2 cut(s) 22, 221
Hpy188I TCNGA 3 cut(s) 229, 502, 573
Hpy188III TCNNGA 4 cut(s) 49, 154, 203, 719
Hpy8I GTNNAC 2 cut(s) 22, 221
Hpy99I CGWCG 2 cut(s) 26, 631
HpyAV CCTTC 4 cut(s) 262, 266, 822, 877
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 3 cut(s) 24, 217, 922
HpyCH4V TGCA 6 cut(s) 347, 406, 605, 710, 739, 916
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 614
HpyF3I CTNAG 2 cut(s) 285, 843
HpySE526I ACGT 3 cut(s) 24, 217, 922
Hsp92II CATG 5 cut(s) 157, 257, 343, 426, 443
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 4 cut(s) 51, 150, 463, 892
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 7 cut(s) 62, 263, 327, 541, 654, 674, 780
Lsp1109I GCAGC 4 cut(s) 197, 390, 589, 617
MaeII ACGT 3 cut(s) 24, 217, 922
MaeIII GTNAC 2 cut(s) 257, 551
MalI GATC 4 cut(s) 53, 152, 465, 894
MbiI CCGCTC 1 cut(s) 703
MboI GATC 4 cut(s) 51, 150, 463, 892
MboII GAAGA 7 cut(s) 201, 242, 384, 484, 518, 706, 965
MflI RGATCY 2 cut(s) 51, 892
MhlI GDGCHC 1 cut(s) 430
MlyI GAGTC 2 cut(s) 215, 817
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 714
Mva1269I GAATGC 2 cut(s) 349, 712
MwoI GCNNNNNNNGC 2 cut(s) 409, 614
NdeII GATC 4 cut(s) 51, 150, 463, 892
NlaIII CATG 5 cut(s) 157, 257, 343, 426, 443
NlaIV GGNNCC 2 cut(s) 13, 388
NmuCI GTSAC 2 cut(s) 257, 551
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 1 cut(s) 153
PctI GAATGC 2 cut(s) 349, 712
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 245, 902
PkrI GCNGC 4 cut(s) 187, 405, 604, 607
PleI GAGTC 2 cut(s) 214, 816
PpsI GAGTC 2 cut(s) 214, 816
PshBI ATTAAT 1 cut(s) 714
Psp1406I AACGTT 1 cut(s) 922
PspN4I GGNNCC 2 cut(s) 13, 388
PspPI GGNCC 4 cut(s) 12, 311, 386, 410
PstI CTGCAG 1 cut(s) 607
PsuI RGATCY 2 cut(s) 51, 892
RsaI GTAC 2 cut(s) 100, 770
RsaNI GTAC 2 cut(s) 99, 769
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 4 cut(s) 186, 404, 603, 606
Sau3AI GATC 4 cut(s) 51, 150, 463, 892
Sau96I GGNCC 4 cut(s) 12, 311, 386, 410
SchI GAGTC 2 cut(s) 215, 817
SduI GDGCHC 1 cut(s) 430
SfcI CTRYAG 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SsiI CCGC 4 cut(s) 29, 437, 586, 703
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 3 cut(s) 27, 220, 925
TaqI TCGA 6 cut(s) 21, 59, 115, 204, 399, 610
TaqII GACCGA 1 cut(s) 385
TatI WGTACW 2 cut(s) 98, 768
TfiI GAWTC 2 cut(s) 245, 902
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TseFI GTSAC 2 cut(s) 257, 551
TseI GCWGC 4 cut(s) 185, 403, 602, 605
Tsp45I GTSAC 2 cut(s) 257, 551
TspDTI ATGAA 6 cut(s) 258, 356, 681, 824, 915, 972
TspGWI ACGGA 2 cut(s) 542, 615
VpaK11BI GGWCC 1 cut(s) 12
VspI ATTAAT 1 cut(s) 714
XagI CCTNNNNNAGG 1 cut(s) 318
XapI RAATTY 4 cut(s) 78, 481, 488, 567
XcmI CCANNNNNNNNNTGG 2 cut(s) 22, 420
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.