Rorug01G0273700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000450
Physical Location & Seq
Forward (+)
38614202 .. 38614441
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0273700.1

Sequence Viewer

Length: 240 bp
ATGATCTTGGTCAGCACATACTCCGTCATGGGGAAGCCTATCAGTTCCAGTTCAAGCGAAATTTTATTAAGAAGACTACCCTTTTTTTTTTTTTCCAGCTTTCAATGGCCAGGGGCTCCGAAACTATACTATTTTGATATTTACAGGGAAGACAGAGATAATTGCAGCAAATGTTTTTGGACGGTAGAAAAAGTTGGCCCTTGTTACTATGATCAGAGCTATTTGTGGCATGATAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

79

Amino Acids

9.43

Weight (kDa)

6.53

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 107
AcsI RAATTY 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 54, 104
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 99, 219
AluI AGCT 2 cut(s) 99, 219
AoxI GGCC 2 cut(s) 107, 196
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 197
BalI TGGCCA 1 cut(s) 109
BanII GRGCYC 1 cut(s) 118
BbsI GAAGAC 2 cut(s) 79, 156
BbvI GCAGC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 211
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 111
BpiI GAAGAC 2 cut(s) 79, 156
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 2 cut(s) 109, 198
BslI CCNNNNNNNGG 1 cut(s) 30
BsnI GGCC 2 cut(s) 109, 198
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 3, 211
BspANI GGCC 2 cut(s) 109, 198
BspLI GGNNCC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 3, 211
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 184
BstKTI GATC 2 cut(s) 6, 214
BstMBI GATC 2 cut(s) 3, 211
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 2 cut(s) 79, 156
BsuRI GGCC 2 cut(s) 109, 198
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 2 cut(s) 28, 230
CviJI RGCY 6 cut(s) 37, 99, 109, 116, 198, 219
CviKI_1 RGCY 6 cut(s) 37, 99, 109, 116, 198, 219
DpnI GATC 2 cut(s) 5, 213
DpnII GATC 2 cut(s) 3, 211
EaeI YGGCCR 1 cut(s) 107
Eco24I GRGCYC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 2 cut(s) 31, 233
FaiI YATR 5 cut(s) 19, 29, 127, 210, 231
FatI CATG 2 cut(s) 27, 229
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 2 cut(s) 109, 198
Hin1II CATG 2 cut(s) 31, 233
Hpy188I TCNGA 2 cut(s) 120, 216
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 165
Hsp92II CATG 2 cut(s) 31, 233
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 3, 211
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 61, 96, 109, 123, 130
Lsp1109I GCAGC 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 203
MalI GATC 2 cut(s) 5, 213
MboI GATC 2 cut(s) 3, 211
MboII GAAGA 2 cut(s) 84, 161
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 109
MluCI AATT 2 cut(s) 60, 160
MluNI TGGCCA 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 2 cut(s) 68, 238
Msp20I TGGCCA 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 2 cut(s) 3, 211
NlaIII CATG 2 cut(s) 31, 233
NlaIV GGNNCC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 68, 238
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 2 cut(s) 3, 211
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 118
SetI ASST 2 cut(s) 101, 221
SgeI CNNG 9 cut(s) 19, 40, 60, 66, 108, 122, 123, 157, 213
Sse9I AATT 2 cut(s) 60, 160
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 184
TasI AATT 2 cut(s) 60, 160
Tru1I TTAA 2 cut(s) 68, 238
Tru9I TTAA 2 cut(s) 68, 238
TseI GCWGC 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 13
XapI RAATTY 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.