Rmu_sc0001200.1_g000008

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001200.1
OG0000450
Physical Location & Seq
Reverse (-)
66010 .. 66534
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001200.1_g000008.1.cds

Sequence Viewer

Length: 525 bp
atgctttctctggctcaaaaacctggaaagcaagctgcctactatcaaggttacaacatccacgggtttagatttcatacacgggagcatgatgagtctaagaaaacacaaaacagtggagttatggttaaaggagacaaccaggatgatgtgccatggtacgaaactttgactgaaattgttgagctttggtatacaaaaaacaataaagttgtcttgtttaattgtaattggtatgacactggtaccaaaggcaaaggttataaagtggatcgttatggaatgttaagtgttaacacaaaaggcaagcttaatactcaagagccatttgtgctagcagttcaagcaactcaagtgtattatgttgagggaatcaaaaatagaacatggagcgttgtggtggaaacgaagcctagaaatgtatatgaaatgcttactgatgaggaggaaccatatcaagaagaaaaaactcggacaattcacacacatgctaaccacaatgaagaagaagatgatgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

174

Amino Acids

20.4

Weight (kDa)

5.43

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 194
AclWI GGATC 1 cut(s) 279
AfaI GTAC 2 cut(s) 161, 247
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 2 cut(s) 22, 141
AluBI AGCT 3 cut(s) 35, 187, 310
AluI AGCT 3 cut(s) 35, 187, 310
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 334
BaeI ACNNNNGTAYC 2 cut(s) 229, 262
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 24, 143
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 335, 414
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 24, 143
BmiI GGNNCC 2 cut(s) 247, 450
BmrFI CCNGG 2 cut(s) 24, 143
BmtI GCTAGC 1 cut(s) 338
BpuEI CTTGAG 2 cut(s) 303, 336
BsaJI CCNNGG 2 cut(s) 61, 155
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 2 cut(s) 24, 143
BseDI CCNNGG 2 cut(s) 61, 155
BseGI GGATG 2 cut(s) 57, 151
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 271
Bsp19I CCATGG 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 247, 450
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 61, 155
BssMI GATC 1 cut(s) 271
BssNAI GTATAC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 155
Bst1107I GTATAC 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 24, 143
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 33, 308, 336
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 2 cut(s) 61, 155
BstF5I GGATG 2 cut(s) 57, 151
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 331, 344
BstNI CCWGG 2 cut(s) 24, 143
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 22, 141
BstV1I GCAGC 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 195
BtgI CCRYGG 2 cut(s) 61, 155
BtsCI GGATG 2 cut(s) 57, 151
BtsIMutI CAGTG 2 cut(s) 121, 240
Cac8I GCNNGC 3 cut(s) 33, 308, 336
Csp6I GTAC 2 cut(s) 160, 246
CviAII CATG 4 cut(s) 89, 156, 387, 488
CviJI RGCY 6 cut(s) 14, 35, 187, 310, 325, 412
CviKI_1 RGCY 6 cut(s) 14, 35, 187, 310, 325, 412
CviQI GTAC 2 cut(s) 160, 246
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 22, 141
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 4 cut(s) 92, 159, 390, 491
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 4 cut(s) 88, 155, 386, 487
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 44, 158
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 335, 414
GluI GCNGC 1 cut(s) 36
Hin1II CATG 4 cut(s) 92, 159, 390, 491
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 95, 372
HpaI GTTAAC 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 195, 295
Hpy188I TCNGA 1 cut(s) 474
Hpy188III TCNNGA 2 cut(s) 320, 458
Hpy8I GTNNAC 2 cut(s) 195, 295
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 344
HpyF3I CTNAG 1 cut(s) 99
Hsp92II CATG 4 cut(s) 92, 159, 390, 491
KpnI GGTACC 1 cut(s) 249
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 85, 390
LpnPI CCDG 5 cut(s) 9, 36, 128, 155, 228
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 2 cut(s) 335, 414
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 473, 515, 518, 521
MluCI AATT 4 cut(s) 177, 223, 229, 477
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 3 cut(s) 361, 436, 439
MseI TTAA 5 cut(s) 129, 222, 287, 294, 312
MslI CAYNNNNRTG 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 24, 143
MvaI CCWGG 2 cut(s) 24, 143
MwoI GCNNNNNNNGC 2 cut(s) 331, 344
NcoI CCATGG 1 cut(s) 155
NdeII GATC 1 cut(s) 271
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 4 cut(s) 92, 159, 390, 491
NlaIV GGNNCC 2 cut(s) 247, 450
NspI RCATGY 1 cut(s) 491
PfeI GAWTC 1 cut(s) 372
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PsiI TTATAA 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 22, 141
PspGI CCWGG 2 cut(s) 22, 141
PspN4I GGNNCC 2 cut(s) 247, 450
RsaI GTAC 2 cut(s) 161, 247
RsaNI GTAC 2 cut(s) 160, 246
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 5 cut(s) 129, 222, 287, 294, 312
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 2 cut(s) 24, 143
SetI ASST 6 cut(s) 25, 37, 52, 189, 262, 312
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 318, 351
SmoI CTYRAG 2 cut(s) 318, 351
Sse9I AATT 4 cut(s) 177, 223, 229, 477
SspMI CTAG 2 cut(s) 335, 414
StyD4I CCNGG 2 cut(s) 22, 141
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 116
TasI AATT 4 cut(s) 177, 223, 229, 477
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 5 cut(s) 129, 222, 287, 294, 312
Tru9I TTAA 5 cut(s) 129, 222, 287, 294, 312
TscAI CASTG 2 cut(s) 121, 247
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 65, 441, 516
TspRI CASTG 2 cut(s) 121, 247
XceI RCATGY 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 2 cut(s) 335, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.