Rw0G005510

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00219
OG0000450
Physical Location & Seq
Reverse (-)
93646 .. 96754
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G005510.1

Sequence Viewer

Length: 2028 bp
ATGTTTTACAAATTGTTGGAGGAATCAGAAGTGCCATTGTATCCTGAGTGCAAGAAATATTCCAACTTGTCATTTATTGTCAACTTGATGCACATCAAGAGTACTGGTAATATGAGCAACAAGGCATTTGACCAGTTATTGGAATTGTTGAAAAATGCATTCCCCATGTGTGAAAAATTGCCAACATCAAACTATGGAGCAAAGAAGATTGTAAAAGAGCTTGGACTTCATTATGAGAGGATTGACGCCTGCAAAAATGATTGTGTAATATATTACAAGGAGCTTGGAGATGCATCTGAATGTCCTACATGCAAGCTTTCAAGGTGGAAGACACAACGCACTACCGTAAAAAAAAAGGGAAAAAAAGTTAAAAAGATTCCGTGGAAAGTTTTGCGATATTTTCCACTCACACCTAGACTTCAACGACTATTTATGTCATCTAAGACAGCTCCAGATATGAGGTGGCATTTTGAAGACCGTGTCAAAGATGGTGTTTTAAGGCATCCAGCAGATGCGGAGGCTTGGAAAACTTTCGATCAAATTCATCCATCATTCGGCAATGAGCATCGAAATGTAAGGCTTGGTTTGGCGACTGACGGATTCAACCCTTTTGGAAATATGAGTGTTAGTCATAGACCGAAGAGTCCTGGCAATGATATTGATGTTTACCTGAGACCGTTGATCGATGAGTTGAACACTTTGTGGGAATATGGTGCAGAAACGTATGACATTTCTACAAAACAAAATTTTCAAATGAGAGCTGCGGTCATGTGGACAATCAATGATTTTCCTGCATATGGTTACATTATATTTTTCCAATTGCCTTACTGGAAGACACTATTGTTGCGCCATAATTTGGATGTGATGCATATCGAAAAAAATATTTTCGATAATGTGGTTGGCACAATAATGAACATTGATGGTAAAACAAAAGATTCTTTAAATGCTCGTCTTGATCTCCAAGCTATGGATATAAGGAAAGCTTACTGGCCTAGAGAGGAGGATGGCAAACTATTCCTGATGGATATTGTTCAAATGTATCTCGTTGGATCAATGCTAAACGACGCAGTATTTCTGCTTTCTTACTTTTTCAGAGAATTGTGTGCTAAAGTACTGAGGGTCTCGGATTTGGAACTTCTGGAAAAGAAAATTGCCATAACTCTATGCAAATTGGAAATGATATTTCCTCCTGCATTTTTTGACATCATGGTTCATTTGTCAATTCACTTGGCGTGGGAAGCAAAAGTATGTGGGCCTGTGCAGTATAGATGGATGTATCCCATTGAAAGGTACTTGCATAAGTTAAATACTTATGTTCGTAATAAAGCCTGTCCAGAAGGTTCTATTGCCGAAGGTTATTTGGCAGAAGAAGAACATAAGGACATTCTTCTTATACAACATGGTGATGATCGGGTGGATGAGTTGCACAAAAAAAATTTTGTGGAATGGTTTTCTAAGAAGATCCAACAATTGTATGTAGATGGAAAAGTGAGCGCTCAAATGCGTTCTTTGGCCCAAAGTCCTGGAAAGCAAGCTGTCTACTACAAAGGTTACAATATCCATGGATTTCGGTTCCATACTGTACAACATGATGTGACGAAGAAAACACAAAATAGCGGAGTTATGGTCAAAGGAGAGAACCAAATTAATTGTGTGCCTTGGTATGGAACCCTTACAGACGTCGTTGAGCTCTGGTATACAGATCACAATAAAGTTGTCTTGTTTCACTGTAATTGGTTTGACACAGCTACCAAAGGCAAAGGTTATAAGGAAGATCGTTATGGCATACTAAGTGTCAACAATAAGGGTAAGTTGAATACCCAAGAGCCATTTGTGCTGGCATCCCAAGCAACCCAGGTTTATTATGTTGAAGGAATAAAAAACAGTGCTTGGAGTGTCGTGGTGGAAACCAAACCCAGAAACATTTTTGAAATGCCTACTAATGAAGAGGAACCGTATCAAGAAGAAGAATCTCAGACGAGTCACACATATGCAAACCGTAACGAGGAAGAAGATAATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

675

Amino Acids

78.79

Weight (kDa)

7.57

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_21 PF02992 163 - 211 1.6e-20 Transposase family tnp2
Transposase_21 PF02992 213 - 269 1.1e-21 Transposase family tnp2
DUF4218 PF13960 367 - 457 9.4e-43 Domain of unknown function (DUF4218)
DUF4216 PF13952 563 - 634 1.7e-24 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1767
AasI GACNNNNNNGTC 1 cut(s) 642
AatII GACGTC 1 cut(s) 1683
AccB7I CCANNNNNTGG 3 cut(s) 139, 856, 967
AccI GTMKAC 2 cut(s) 1539, 1697
AciI CCGC 3 cut(s) 515, 764, 1617
AclWI GGATC 2 cut(s) 1057, 1456
AcsI RAATTY 3 cut(s) 540, 745, 1435
AcyI GRCGYC 2 cut(s) 246, 1680
AdeI CACNNNGTG 1 cut(s) 702
AfaI GTAC 4 cut(s) 103, 1113, 1292, 1584
AfeI AGCGCT 1 cut(s) 1495
AfiI CCNNNNNNNGG 8 cut(s) 139, 554, 797, 856, 967, 1287, 1664, 2005
AjnI CCWGG 3 cut(s) 646, 1522, 1854
Alw21I GWGCWC 1 cut(s) 1692
Alw26I GTCTC 2 cut(s) 667, 1126
AlwI GGATC 2 cut(s) 1057, 1456
Aor51HI AGCGCT 1 cut(s) 1495
AoxI GGCC 3 cut(s) 989, 1253, 1512
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 3 cut(s) 540, 745, 1435
AseI ATTAAT 1 cut(s) 1647
Asp700I GAANNNNTTC 1 cut(s) 530
AspLEI GCGC 2 cut(s) 849, 1496
AspS9I GGNCC 2 cut(s) 1253, 1513
AsuHPI GGTGA 1 cut(s) 1415
BanII GRGCYC 1 cut(s) 1692
BbsI GAAGAC 3 cut(s) 335, 480, 839
Bbv12I GWGCWC 1 cut(s) 1692
BbvI GCAGC 1 cut(s) 748
BccI CCATC 7 cut(s) 482, 556, 914, 998, 1015, 1263, 1475
BciT130I CCWGG 3 cut(s) 648, 1524, 1856
BciVI GTATCC 2 cut(s) 51, 1287
BcoDI GTCTC 2 cut(s) 667, 1126
BfaI CTAG 2 cut(s) 414, 993
BfoI RGCGCY 1 cut(s) 1497
BfuI GTATCC 2 cut(s) 51, 1287
BisI GCNGC 1 cut(s) 762
BlsI GCNGC 1 cut(s) 763
BmcAI AGTACT 2 cut(s) 103, 1113
Bme1390I CCNGG 3 cut(s) 648, 1524, 1856
BmgT120I GGNCC 2 cut(s) 1253, 1513
BmiI GGNNCC 3 cut(s) 1574, 1669, 1953
BmrFI CCNGG 3 cut(s) 648, 1524, 1856
BmsI GCATC 8 cut(s) 78, 280, 302, 502, 511, 574, 855, 1850
BpiI GAAGAC 3 cut(s) 335, 480, 839
BpmI CTGGAG 1 cut(s) 435
Bsa29I ATCGAT 1 cut(s) 684
BsaBI GATNNNNATC 2 cut(s) 92, 869
BsaHI GRCGYC 2 cut(s) 246, 1680
BsaI GGTCTC 2 cut(s) 667, 1126
BsaJI CCNNGG 4 cut(s) 380, 1561, 1658, 1854
BsaXI ACNNNNNCTCC 2 cut(s) 1611, 1641
Bsc4I CCNNNNNNNGG 8 cut(s) 139, 554, 797, 856, 967, 1287, 1664, 2005
Bse1I ACTGG 4 cut(s) 109, 133, 833, 992
Bse3DI GCAATG 2 cut(s) 565, 658
Bse8I GATNNNNATC 2 cut(s) 92, 869
BseBI CCWGG 3 cut(s) 648, 1524, 1856
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 4 cut(s) 380, 1561, 1658, 1854
BseGI GGATG 7 cut(s) 502, 544, 865, 1009, 1278, 1423, 1841
BseJI GATNNNNATC 2 cut(s) 92, 869
BseLI CCNNNNNNNGG 8 cut(s) 139, 554, 797, 856, 967, 1287, 1664, 2005
BseMI GCAATG 2 cut(s) 565, 658
BseMII CTCAG 4 cut(s) 36, 662, 1106, 1988
BseNI ACTGG 4 cut(s) 109, 133, 833, 992
BseRI GAGGAG 1 cut(s) 1013
BseXI GCAGC 1 cut(s) 748
BsgI GTGCAG 2 cut(s) 735, 1280
BshFI GGCC 3 cut(s) 991, 1255, 1514
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 1692
BslI CCNNNNNNNGG 8 cut(s) 139, 554, 797, 856, 967, 1287, 1664, 2005
BsmAI GTCTC 2 cut(s) 667, 1126
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 3 cut(s) 991, 1255, 1514
Bso31I GGTCTC 2 cut(s) 667, 1126
Bsp1286I GDGCHC 1 cut(s) 1692
Bsp1407I TGTACA 1 cut(s) 1582
Bsp143I GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
Bsp19I CCATGG 1 cut(s) 1561
BspACI CCGC 3 cut(s) 515, 764, 1617
BspANI GGCC 3 cut(s) 991, 1255, 1514
BspCNI CTCAG 4 cut(s) 37, 663, 1107, 1987
BspDI ATCGAT 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 1574, 1669, 1953
BspPI GGATC 2 cut(s) 1057, 1456
BspTNI GGTCTC 2 cut(s) 667, 1126
BsrDI GCAATG 2 cut(s) 565, 658
BsrGI TGTACA 1 cut(s) 1582
BsrI ACTGG 4 cut(s) 109, 133, 833, 992
BssECI CCNNGG 4 cut(s) 380, 1561, 1658, 1854
BssMI GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
BssNAI GTATAC 1 cut(s) 1698
BssNI GRCGYC 2 cut(s) 246, 1680
BssT1I CCWWGG 2 cut(s) 1561, 1658
Bst1107I GTATAC 1 cut(s) 1698
Bst2UI CCWGG 3 cut(s) 648, 1524, 1856
Bst4CI ACNGT 8 cut(s) 346, 479, 678, 1582, 1730, 1886, 1956, 2000
Bst6I CTCTTC 2 cut(s) 635, 1941
BstACI GRCGYC 2 cut(s) 246, 1680
BstAUI TGTACA 1 cut(s) 1582
BstC8I GCNNGC 4 cut(s) 250, 314, 1533, 1839
BstDEI CTNAG 7 cut(s) 45, 441, 671, 1115, 1455, 1790, 1974
BstDSI CCRYGG 2 cut(s) 380, 1561
BstF5I GGATG 7 cut(s) 502, 544, 865, 1009, 1278, 1423, 1841
BstH2I RGCGCY 1 cut(s) 1497
BstHHI GCGC 2 cut(s) 849, 1496
BstKTI GATC 8 cut(s) 538, 684, 958, 1052, 1411, 1464, 1705, 1777
BstMAI GTCTC 2 cut(s) 667, 1126
BstMBI GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
BstMWI GCNNNNNNNGC 3 cut(s) 1238, 1834, 1847
BstNI CCWGG 3 cut(s) 648, 1524, 1856
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 3 cut(s) 646, 1522, 1854
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 3 cut(s) 335, 480, 839
BstX2I RGATCY 1 cut(s) 1461
BstXI CCANNNNNNTGG 1 cut(s) 1523
BstYI RGATCY 1 cut(s) 1461
BstZ17I GTATAC 1 cut(s) 1698
Bsu15I ATCGAT 1 cut(s) 684
BsuI GTATCC 2 cut(s) 51, 1287
BsuRI GGCC 3 cut(s) 991, 1255, 1514
BsuTUI ATCGAT 1 cut(s) 684
BtgI CCRYGG 2 cut(s) 380, 1561
BtsCI GGATG 7 cut(s) 502, 544, 865, 1009, 1278, 1423, 1841
BtsIMutI CAGTG 2 cut(s) 1726, 1891
Cac8I GCNNGC 4 cut(s) 250, 314, 1533, 1839
CfoI GCGC 2 cut(s) 849, 1496
Cfr13I GGNCC 2 cut(s) 1253, 1513
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 2 cut(s) 254, 1073
Csp6I GTAC 4 cut(s) 102, 1112, 1291, 1583
CviAII CATG 7 cut(s) 166, 309, 769, 1207, 1400, 1562, 1589
CviQI GTAC 4 cut(s) 102, 1112, 1291, 1583
DdeI CTNAG 7 cut(s) 45, 441, 671, 1115, 1455, 1790, 1974
DpnI GATC 8 cut(s) 537, 683, 957, 1051, 1410, 1463, 1704, 1776
DpnII GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
DraI TTTAAA 1 cut(s) 942
DraIII CACNNNGTG 1 cut(s) 702
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 635, 1941
EarI CTCTTC 2 cut(s) 635, 1941
Ecl136II GAGCTC 1 cut(s) 1690
Eco130I CCWWGG 2 cut(s) 1561, 1658
Eco24I GRGCYC 1 cut(s) 1692
Eco31I GGTCTC 2 cut(s) 667, 1126
Eco47III AGCGCT 1 cut(s) 1495
Eco53kI GAGCTC 1 cut(s) 1690
EcoICRI GAGCTC 1 cut(s) 1690
EcoRII CCWGG 3 cut(s) 646, 1522, 1854
EcoT14I CCWWGG 2 cut(s) 1561, 1658
EcoT22I ATGCAT 3 cut(s) 160, 295, 870
EcoT38I GRGCYC 1 cut(s) 1692
ErhI CCWWGG 2 cut(s) 1561, 1658
FaeI CATG 7 cut(s) 169, 312, 772, 1210, 1403, 1565, 1592
FalI AAGNNNNNCTT 2 cut(s) 967, 999
FatI CATG 7 cut(s) 165, 308, 768, 1206, 1399, 1561, 1588
FauNDI CATATG 2 cut(s) 796, 1990
FblI GTMKAC 2 cut(s) 1539, 1697
Fnu4HI GCNGC 1 cut(s) 762
FokI GGATG 7 cut(s) 489, 531, 872, 1016, 1285, 1430, 1828
FriOI GRGCYC 1 cut(s) 1692
Fsp4HI GCNGC 1 cut(s) 762
FspBI CTAG 2 cut(s) 414, 993
GlaI GCGC 2 cut(s) 848, 1495
GluI GCNGC 1 cut(s) 762
GsuI CTGGAG 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 1497
HaeIII GGCC 3 cut(s) 991, 1255, 1514
HgaI GACGC 2 cut(s) 254, 1073
HhaI GCGC 2 cut(s) 849, 1496
Hin1I GRCGYC 2 cut(s) 246, 1680
Hin1II CATG 7 cut(s) 169, 312, 772, 1210, 1403, 1565, 1592
Hin6I GCGC 2 cut(s) 847, 1494
HinP1I GCGC 2 cut(s) 847, 1494
HincII GTYRAC 2 cut(s) 82, 1798
HindII GTYRAC 2 cut(s) 82, 1798
HindIII AAGCTT 2 cut(s) 314, 981
HinfI GANTC 7 cut(s) 23, 376, 600, 643, 935, 1970, 1981
HphI GGTGA 1 cut(s) 1415
Hpy166II GTNNAC 6 cut(s) 82, 667, 774, 1540, 1698, 1798
Hpy188I TCNGA 5 cut(s) 28, 298, 1094, 1126, 1977
Hpy188III TCNNGA 8 cut(s) 44, 97, 452, 953, 1018, 1139, 1334, 1961
Hpy8I GTNNAC 6 cut(s) 82, 667, 774, 1540, 1698, 1798
Hpy99I CGWCG 2 cut(s) 1067, 1685
HpyAV CCTTC 3 cut(s) 1331, 1346, 1865
HpyCH4III ACNGT 8 cut(s) 346, 479, 678, 1582, 1730, 1886, 1956, 2000
HpyCH4IV ACGT 2 cut(s) 722, 1680
HpyF10VI GCNNNNNNNGC 3 cut(s) 1238, 1834, 1847
HpyF3I CTNAG 7 cut(s) 45, 441, 671, 1115, 1455, 1790, 1974
HpySE526I ACGT 2 cut(s) 722, 1680
Hsp92I GRCGYC 2 cut(s) 246, 1680
Hsp92II CATG 7 cut(s) 169, 312, 772, 1210, 1403, 1565, 1592
HspAI GCGC 2 cut(s) 847, 1494
Kzo9I GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
LmnI GCTCC 3 cut(s) 197, 280, 454
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 8 cut(s) 78, 280, 302, 502, 511, 574, 855, 1850
MaeI CTAG 2 cut(s) 414, 993
MaeII ACGT 2 cut(s) 722, 1680
MaeIII GTNAC 5 cut(s) 800, 1550, 1594, 1982, 2000
MalI GATC 8 cut(s) 537, 683, 957, 1051, 1410, 1463, 1704, 1776
MboI GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
MfeI CAATTG 2 cut(s) 818, 1469
MflI RGATCY 1 cut(s) 1461
MhlI GDGCHC 1 cut(s) 1692
MlyI GAGTC 2 cut(s) 652, 1990
MmeI TCCRAC 3 cut(s) 87, 1027, 1489
Mph1103I ATGCAT 3 cut(s) 160, 295, 870
MroXI GAANNNNTTC 1 cut(s) 530
MseI TTAA 5 cut(s) 369, 497, 941, 1304, 1647
MslI CAYNNNNRTG 5 cut(s) 298, 570, 908, 1404, 1989
MspR9I CCNGG 3 cut(s) 648, 1524, 1856
MunI CAATTG 2 cut(s) 818, 1469
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 3 cut(s) 648, 1524, 1856
MwoI GCNNNNNNNGC 3 cut(s) 1238, 1834, 1847
NcoI CCATGG 1 cut(s) 1561
NdeI CATATG 2 cut(s) 796, 1990
NdeII GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
NlaIII CATG 7 cut(s) 169, 312, 772, 1210, 1403, 1565, 1592
NlaIV GGNNCC 3 cut(s) 1574, 1669, 1953
NmuCI GTSAC 2 cut(s) 1594, 1982
NsiI ATGCAT 3 cut(s) 160, 295, 870
NspI RCATGY 1 cut(s) 312
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 530
PfeI GAWTC 5 cut(s) 23, 376, 600, 935, 1970
PflFI GACNNNGTC 1 cut(s) 479
PflMI CCANNNNNTGG 3 cut(s) 139, 856, 967
PfoI TCCNGGA 1 cut(s) 1522
PkrI GCNGC 1 cut(s) 763
PleI GAGTC 2 cut(s) 651, 1989
PpsI GAGTC 2 cut(s) 651, 1989
PshBI ATTAAT 1 cut(s) 1647
PsiI TTATAA 1 cut(s) 1767
Psp124BI GAGCTC 1 cut(s) 1692
Psp6I CCWGG 3 cut(s) 646, 1522, 1854
PspGI CCWGG 3 cut(s) 646, 1522, 1854
PspN4I GGNNCC 3 cut(s) 1574, 1669, 1953
PspPI GGNCC 2 cut(s) 1253, 1513
PsuI RGATCY 1 cut(s) 1461
PsyI GACNNNGTC 1 cut(s) 479
RsaI GTAC 4 cut(s) 103, 1113, 1292, 1584
RsaNI GTAC 4 cut(s) 102, 1112, 1291, 1583
RseI CAYNNNNRTG 5 cut(s) 298, 570, 908, 1404, 1989
SacI GAGCTC 1 cut(s) 1692
SaqAI TTAA 5 cut(s) 369, 497, 941, 1304, 1647
SatI GCNGC 1 cut(s) 762
Sau3AI GATC 8 cut(s) 535, 681, 955, 1049, 1408, 1461, 1702, 1774
Sau96I GGNCC 2 cut(s) 1253, 1513
ScaI AGTACT 2 cut(s) 103, 1113
SchI GAGTC 2 cut(s) 652, 1990
ScrFI CCNGG 3 cut(s) 648, 1524, 1856
SduI GDGCHC 1 cut(s) 1692
SfaNI GCATC 8 cut(s) 78, 280, 302, 502, 511, 574, 855, 1850
SmiMI CAYNNNNRTG 5 cut(s) 298, 570, 908, 1404, 1989
SsiI CCGC 3 cut(s) 515, 764, 1617
SspI AATATT 2 cut(s) 59, 883
SspMI CTAG 2 cut(s) 414, 993
SstI GAGCTC 1 cut(s) 1692
StyD4I CCNGG 3 cut(s) 646, 1522, 1854
StyI CCWWGG 2 cut(s) 1561, 1658
TaaI ACNGT 8 cut(s) 346, 479, 678, 1582, 1730, 1886, 1956, 2000
TaiI ACGT 2 cut(s) 725, 1683
TaqI TCGA 5 cut(s) 534, 568, 684, 873, 888
TaqII GACCGA 1 cut(s) 652
TatI WGTACW 3 cut(s) 101, 1111, 1582
TfiI GAWTC 5 cut(s) 23, 376, 600, 935, 1970
Tru1I TTAA 5 cut(s) 369, 497, 941, 1304, 1647
Tru9I TTAA 5 cut(s) 369, 497, 941, 1304, 1647
TscAI CASTG 2 cut(s) 1733, 1891
TseFI GTSAC 2 cut(s) 1594, 1982
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 2 cut(s) 1594, 1982
TspDTI ATGAA 5 cut(s) 218, 533, 926, 1202, 1959
TspGWI ACGGA 2 cut(s) 369, 612
TspRI CASTG 2 cut(s) 1733, 1891
Tth111I GACNNNGTC 1 cut(s) 479
Van91I CCANNNNNTGG 3 cut(s) 139, 856, 967
VspI ATTAAT 1 cut(s) 1647
XapI RAATTY 3 cut(s) 540, 745, 1435
XceI RCATGY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XmiI GTMKAC 2 cut(s) 1539, 1697
XmnI GAANNNNTTC 1 cut(s) 530
XspI CTAG 2 cut(s) 414, 993
ZraI GACGTC 1 cut(s) 1681
ZrmI AGTACT 2 cut(s) 103, 1113
Zsp2I ATGCAT 3 cut(s) 160, 295, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.