Rw4G010530

Transposase family tnp2

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
24422092 .. 24424293
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G010530.1

Sequence Viewer

Length: 1485 bp
ATGTGGACAATCAATGATTTTCCTGCATATGGTTACATGTCTGGTTGGAGTACACAGGGAAAATTGGCATTTCCATGTTGTGCGCCAGAGACTTCTAGTCGTAGATTACAACATGGATCAAAACAATATTATATGAGGTACCGTCGATTTTTAGCACCAGATCATGAATGGCGTAAACAACGGGAACCTTTTGATAATACAAGGGAAGAGAAATGTGCAAAGACACTATTGTTGCGCCATAATTTGGATGTGATGCATATCGAAAAAAATATTTTCGATAACGTGGTTGGCACAATAATGAACATTGATGGTAAAACAAAAGATTCTTTAAATGCTCGTATTGATCTCCAAGCTATGGATATAAGGAAAGCTTACTGGTCTAGAGAGGAGGATGGCAAACTAGTTTATGATCCGGCACCTTTTGAATTGTCAGCTGTTGATAACAAAGCTATATGTGAATGGTTACTGAACTTGACAGTTCCTGATGGATATTGTTCAAATGTATCTCGTTGGATCAATGCTAAACGACGCAGTATTTCTGGCATGAAGAGTCATGATTGCCATAGTTACTGCCCAAAAAAACCTTGTGAAGCATTGATTGAGCTTTCTTACTTTTTTAGAGTATTGTGTGCTAAAGTGCTGAGGGTCTCGGATTTGGAACTTCTGGAAAATAAAATTGCCATAACTCTATGCAAGTTGGAAATGATATTTCCTCCTGCATTTTTTGACATCATGGTTCATTTGTCAATTCACTTGGCGTGGGAAGCAAAAGTATGTGGGCCTGTGCAGTATAGATGGATGTATCCCATTAAAATGTACTTGCACAAGTTAAATACTTATGTTCGTAATAAAGCCTGTTTAGAAGGTTATTTGGCAGAAGAAGAACATAAAGACATTCTTCGTATACAACATGGTGATGCTCGGGTGGATGAGTTGCACAAAAAAAAATTTGTGAAATGGTTTTCTAAGAAGATCCAACAATTGTATGTAGATGGAAAAGTGAGCGCTCAAATGCGTTCTTTGGCCCAAAGTCCTGGAAAGCAAGCTGTCTCCTACAAAGGTTACAATATCCATGGATTTCGATTCCATACTGTACAGCATGACGTGACGAAGAAAACACAAAATAGCAGAGTTATGGTCAAAGGAGAGAACCAAATTAATTGTGTGCCTTGGTATGGAACCCTTACAGACGTTGTTGAGCTTTGGTATACAGGTCACAATAAAGTTGTCTTATTTCACTGTAATTGGTTTGACACAGCTACCAAAGGCAAAAGTTATAAGGAAGATCGTTATGGCATATTAAGTGTCAACAATAAGGGTAAGTTGAATACCCATGAGCCATTTGTGCTGGTATCCCAAGCAACTCAGGTTTATTATGTTGAAGCAATAAAAAATAGTGCTTGGAGTTTCGTGGTGGAAACCAAACCCAGAAACACGAGTCACACATATGCAAACCGTAACGAGGAAAAAGATAATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

494

Amino Acids

57.69

Weight (kDa)

9.03

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_21 PF02992 1 - 76 7.1e-20 Transposase family tnp2
DUF4218 PF13960 209 - 296 6.7e-37 Domain of unknown function (DUF4218)
DUF4216 PF13952 400 - 471 2e-22 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1278
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 2 cut(s) 138, 415
AccB7I CCANNNNNTGG 2 cut(s) 244, 355
AccI GTMKAC 2 cut(s) 904, 1208
AclWI GGATC 4 cut(s) 124, 404, 521, 967
AcsI RAATTY 1 cut(s) 947
AfaI GTAC 4 cut(s) 52, 140, 818, 1095
AfeI AGCGCT 1 cut(s) 1006
AfiI CCNNNNNNNGG 5 cut(s) 29, 244, 355, 1175, 1462
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 4 cut(s) 425, 498, 1327, 1382
AhdI GACNNNNNGTC 1 cut(s) 96
AhlI ACTAGT 1 cut(s) 400
AjiI CACGTC 1 cut(s) 1105
AjnI CCWGG 1 cut(s) 1033
AluBI AGCT 8 cut(s) 353, 371, 434, 449, 604, 1046, 1201, 1259
AluI AGCT 8 cut(s) 353, 371, 434, 449, 604, 1046, 1201, 1259
Alw26I GTCTC 3 cut(s) 83, 652, 1054
AlwI GGATC 4 cut(s) 124, 404, 521, 967
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 921
Aor51HI AGCGCT 1 cut(s) 1006
AoxI GGCC 2 cut(s) 779, 1023
ApoI RAATTY 1 cut(s) 947
AseI ATTAAT 1 cut(s) 1158
Asp718I GGTACC 1 cut(s) 138
AspLEI GCGC 3 cut(s) 85, 237, 1007
AspS9I GGNCC 2 cut(s) 779, 1024
AsuHPI GGTGA 1 cut(s) 926
AvaI CYCGRG 1 cut(s) 921
BanI GGYRCC 2 cut(s) 138, 415
BauI CACGAG 1 cut(s) 1435
BbvCI CCTCAGC 1 cut(s) 641
BccI CCATC 5 cut(s) 302, 386, 479, 789, 986
BciT130I CCWGG 1 cut(s) 1035
BciVI GTATCC 2 cut(s) 813, 1363
BcoDI GTCTC 3 cut(s) 83, 652, 1054
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 3 cut(s) 96, 381, 401
BfoI RGCGCY 1 cut(s) 1008
BfuI GTATCC 2 cut(s) 813, 1363
Bme1390I CCNGG 1 cut(s) 1035
BmeRI GACNNNNNGTC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 921
BmgBI CACGTC 1 cut(s) 1105
BmgT120I GGNCC 2 cut(s) 779, 1024
BmiI GGNNCC 4 cut(s) 140, 186, 417, 1180
BmrFI CCNGG 1 cut(s) 1035
BmsI GCATC 2 cut(s) 243, 907
Bpu10I CCTNAGC 1 cut(s) 641
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 652
BsaJI CCNNGG 2 cut(s) 1072, 1169
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 244, 355, 1175, 1462
Bse1I ACTGG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 1035
BseDI CCNNGG 2 cut(s) 1072, 1169
BseGI GGATG 4 cut(s) 253, 397, 804, 934
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 5 cut(s) 29, 244, 355, 1175, 1462
BseMII CTCAG 2 cut(s) 632, 1379
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 806
BshFI GGCC 2 cut(s) 781, 1025
BshNI GGYRCC 2 cut(s) 138, 415
BsiHKCI CYCGRG 1 cut(s) 921
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 5 cut(s) 29, 244, 355, 1175, 1462
BsmAI GTCTC 3 cut(s) 83, 652, 1054
BsnI GGCC 2 cut(s) 781, 1025
Bso31I GGTCTC 1 cut(s) 652
BsoBI CYCGRG 1 cut(s) 921
Bsp1407I TGTACA 1 cut(s) 1093
Bsp143I GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
Bsp19I CCATGG 1 cut(s) 1072
BspANI GGCC 2 cut(s) 781, 1025
BspCNI CTCAG 2 cut(s) 633, 1378
BspHI TCATGA 2 cut(s) 163, 553
BspLI GGNNCC 4 cut(s) 140, 186, 417, 1180
BspPI GGATC 4 cut(s) 124, 404, 521, 967
BspT107I GGYRCC 2 cut(s) 138, 415
BspTNI GGTCTC 1 cut(s) 652
BsrGI TGTACA 1 cut(s) 1093
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 1072, 1169
BssMI GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
BssNAI GTATAC 2 cut(s) 905, 1209
BssSI CACGAG 1 cut(s) 1435
BssT1I CCWWGG 2 cut(s) 1072, 1169
Bst1107I GTATAC 2 cut(s) 905, 1209
Bst2BI CACGAG 1 cut(s) 1435
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 5 cut(s) 143, 478, 1093, 1241, 1457
Bst6I CTCTTC 2 cut(s) 201, 542
BstAUI TGTACA 1 cut(s) 1093
BstC8I GCNNGC 1 cut(s) 1044
BstDEI CTNAG 3 cut(s) 641, 966, 1365
BstDSI CCRYGG 1 cut(s) 1072
BstF5I GGATG 4 cut(s) 253, 397, 804, 934
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 3 cut(s) 85, 237, 1007
BstKTI GATC 7 cut(s) 119, 163, 346, 412, 516, 975, 1288
BstMAI GTCTC 3 cut(s) 83, 652, 1054
BstMBI GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 764, 1345
BstNI CCWGG 1 cut(s) 1035
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 1033
BstX2I RGATCY 1 cut(s) 972
BstXI CCANNNNNNTGG 1 cut(s) 1034
BstYI RGATCY 1 cut(s) 972
BstZ17I GTATAC 2 cut(s) 905, 1209
BsuI GTATCC 2 cut(s) 813, 1363
BsuRI GGCC 2 cut(s) 781, 1025
BtgI CCRYGG 1 cut(s) 1072
BtrI CACGTC 1 cut(s) 1105
BtsCI GGATG 4 cut(s) 253, 397, 804, 934
BtsIMutI CAGTG 1 cut(s) 1237
Cac8I GCNNGC 1 cut(s) 1044
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 2 cut(s) 163, 553
CfoI GCGC 3 cut(s) 85, 237, 1007
Cfr13I GGNCC 2 cut(s) 779, 1024
CseI GACGC 1 cut(s) 537
Csp6I GTAC 4 cut(s) 51, 139, 817, 1094
CviQI GTAC 4 cut(s) 51, 139, 817, 1094
DdeI CTNAG 3 cut(s) 641, 966, 1365
DpnI GATC 7 cut(s) 118, 162, 345, 411, 515, 974, 1287
DpnII GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
DraI TTTAAA 1 cut(s) 330
DriI GACNNNNNGTC 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 201, 542
Eam1105I GACNNNNNGTC 1 cut(s) 96
EarI CTCTTC 2 cut(s) 201, 542
Eco130I CCWWGG 2 cut(s) 1072, 1169
Eco31I GGTCTC 1 cut(s) 652
Eco47III AGCGCT 1 cut(s) 1006
Eco88I CYCGRG 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 1072, 1169
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 1072, 1169
FalI AAGNNNNNCTT 4 cut(s) 355, 387, 882, 914
FauNDI CATATG 2 cut(s) 28, 1447
FblI GTMKAC 2 cut(s) 904, 1208
FokI GGATG 4 cut(s) 260, 404, 811, 941
FspBI CTAG 3 cut(s) 96, 381, 401
GlaI GCGC 3 cut(s) 84, 236, 1006
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 2 cut(s) 781, 1025
HapII CCGG 1 cut(s) 413
HgaI GACGC 1 cut(s) 537
HhaI GCGC 3 cut(s) 85, 237, 1007
Hin6I GCGC 3 cut(s) 83, 235, 1005
HinP1I GCGC 3 cut(s) 83, 235, 1005
HincII GTYRAC 1 cut(s) 1309
HindII GTYRAC 1 cut(s) 1309
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 4 cut(s) 323, 550, 1083, 1438
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 926
Hpy166II GTNNAC 6 cut(s) 6, 53, 176, 905, 1209, 1309
Hpy188I TCNGA 1 cut(s) 652
Hpy188III TCNNGA 5 cut(s) 164, 381, 482, 554, 665
Hpy8I GTNNAC 6 cut(s) 6, 53, 176, 905, 1209, 1309
Hpy99I CGWCG 2 cut(s) 147, 531
HpyAV CCTTC 1 cut(s) 857
HpyCH4III ACNGT 5 cut(s) 143, 478, 1093, 1241, 1457
HpyCH4IV ACGT 3 cut(s) 282, 1104, 1191
HpyCH4V TGCA 9 cut(s) 26, 218, 256, 693, 719, 787, 823, 937, 1451
HpyF10VI GCNNNNNNNGC 2 cut(s) 764, 1345
HpyF3I CTNAG 3 cut(s) 641, 966, 1365
HpySE526I ACGT 3 cut(s) 282, 1104, 1191
HspAI GCGC 3 cut(s) 83, 235, 1005
KpnI GGTACC 1 cut(s) 142
Kzo9I GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
LweI GCATC 2 cut(s) 243, 907
MaeI CTAG 3 cut(s) 96, 381, 401
MaeII ACGT 3 cut(s) 282, 1104, 1191
MaeIII GTNAC 8 cut(s) 32, 462, 566, 1061, 1105, 1214, 1439, 1457
MalI GATC 7 cut(s) 118, 162, 345, 411, 515, 974, 1287
MboI GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
MboII GAAGA 8 cut(s) 218, 559, 890, 890, 893, 982, 1123, 1295
MfeI CAATTG 1 cut(s) 980
MflI RGATCY 1 cut(s) 972
MlyI GAGTC 2 cut(s) 559, 1447
MmeI TCCRAC 4 cut(s) 26, 491, 678, 1000
MnlI CCTC 6 cut(s) 129, 379, 382, 636, 723, 1456
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 5 cut(s) 329, 810, 830, 1158, 1301
MslI CAYNNNNRTG 5 cut(s) 73, 296, 812, 915, 1446
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 1 cut(s) 1035
MunI CAATTG 1 cut(s) 980
MvaI CCWGG 1 cut(s) 1035
MwoI GCNNNNNNNGC 2 cut(s) 764, 1345
NcoI CCATGG 1 cut(s) 1072
NdeI CATATG 2 cut(s) 28, 1447
NdeII GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
NlaIV GGNNCC 4 cut(s) 140, 186, 417, 1180
NmuCI GTSAC 3 cut(s) 1105, 1214, 1439
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 40
PagI TCATGA 2 cut(s) 163, 553
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 2 cut(s) 323, 1083
PflMI CCANNNNNTGG 2 cut(s) 244, 355
PfoI TCCNGGA 1 cut(s) 1033
PleI GAGTC 2 cut(s) 558, 1446
PpsI GAGTC 2 cut(s) 558, 1446
PscI ACATGT 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 1158
PsiI TTATAA 1 cut(s) 1278
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 4 cut(s) 140, 186, 417, 1180
PspPI GGNCC 2 cut(s) 779, 1024
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 972
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 4 cut(s) 52, 140, 818, 1095
RsaNI GTAC 4 cut(s) 51, 139, 817, 1094
RseI CAYNNNNRTG 5 cut(s) 73, 296, 812, 915, 1446
SaqAI TTAA 5 cut(s) 329, 810, 830, 1158, 1301
Sau3AI GATC 7 cut(s) 116, 160, 343, 409, 513, 972, 1285
Sau96I GGNCC 2 cut(s) 779, 1024
SchI GAGTC 2 cut(s) 559, 1447
ScrFI CCNGG 1 cut(s) 1035
SfaNI GCATC 2 cut(s) 243, 907
SmiMI CAYNNNNRTG 5 cut(s) 73, 296, 812, 915, 1446
SpeI ACTAGT 1 cut(s) 400
SspI AATATT 2 cut(s) 128, 271
SspMI CTAG 3 cut(s) 96, 381, 401
StyD4I CCNGG 1 cut(s) 1033
StyI CCWWGG 2 cut(s) 1072, 1169
TaaI ACNGT 5 cut(s) 143, 478, 1093, 1241, 1457
TaiI ACGT 3 cut(s) 285, 1107, 1194
TaqI TCGA 4 cut(s) 145, 261, 276, 1081
TatI WGTACW 3 cut(s) 50, 816, 1093
TfiI GAWTC 2 cut(s) 323, 1083
Tru1I TTAA 5 cut(s) 329, 810, 830, 1158, 1301
Tru9I TTAA 5 cut(s) 329, 810, 830, 1158, 1301
TscAI CASTG 1 cut(s) 1244
TseFI GTSAC 3 cut(s) 1105, 1214, 1439
Tsp45I GTSAC 3 cut(s) 1105, 1214, 1439
TspDTI ATGAA 4 cut(s) 180, 314, 560, 728
TspRI CASTG 1 cut(s) 1244
Van91I CCANNNNNTGG 2 cut(s) 244, 355
VspI ATTAAT 1 cut(s) 1158
XapI RAATTY 1 cut(s) 947
XbaI TCTAGA 1 cut(s) 380
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XmiI GTMKAC 2 cut(s) 904, 1208
XspI CTAG 3 cut(s) 96, 381, 401
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.